miRNA display CGI


Results 61 - 80 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 61427 0.68 0.726262
Target:  5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3'
miRNA:   3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5'
21572 5' -58 NC_004812.1 + 2221 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 126789 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 46834 0.69 0.676764
Target:  5'- cUgCGGGCCCCCgAGCGUCUgccAGUa -3'
miRNA:   3'- cGgGCUCGGGGG-UCGCAGAacuUCAg -5'
21572 5' -58 NC_004812.1 + 119394 0.69 0.676764
Target:  5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3'
miRNA:   3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5'
21572 5' -58 NC_004812.1 + 119255 0.69 0.676764
Target:  5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3'
miRNA:   3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5'
21572 5' -58 NC_004812.1 + 108308 0.68 0.695736
Target:  5'- cGCCCGAGCCCgCAcgcgcguGCGUCccaUGuucGUCu -3'
miRNA:   3'- -CGGGCUCGGGgGU-------CGCAGa--ACuu-CAG- -5'
21572 5' -58 NC_004812.1 + 105213 0.68 0.716486
Target:  5'- gGCgCGGGCCCCgGGC-UCUUcGAAGg- -3'
miRNA:   3'- -CGgGCUCGGGGgUCGcAGAA-CUUCag -5'
21572 5' -58 NC_004812.1 + 21126 0.68 0.716486
Target:  5'- gGCCUGGGCCUgCAGCGaCacgUUGguGUCg -3'
miRNA:   3'- -CGGGCUCGGGgGUCGCaG---AACuuCAG- -5'
21572 5' -58 NC_004812.1 + 103147 0.68 0.716486
Target:  5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3'
miRNA:   3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 19312 0.71 0.576068
Target:  5'- aCgCGGGCCCCCAGguaCGUgUaGAGGUCg -3'
miRNA:   3'- cGgGCUCGGGGGUC---GCAgAaCUUCAG- -5'
21572 5' -58 NC_004812.1 + 148597 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 94507 0.71 0.5463
Target:  5'- cGCCCGAGCaaCCCCAugcgcGCGUCagGcgcGGGUCg -3'
miRNA:   3'- -CGGGCUCG--GGGGU-----CGCAGaaC---UUCAG- -5'
21572 5' -58 NC_004812.1 + 44614 0.72 0.507425
Target:  5'- cCCCGccAGCCCCCcGCG-CUUGggGg- -3'
miRNA:   3'- cGGGC--UCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 125854 0.72 0.497886
Target:  5'- cGCCCGcGGCCCCgGGCaUCgUGGAGcUCg -3'
miRNA:   3'- -CGGGC-UCGGGGgUCGcAGaACUUC-AG- -5'
21572 5' -58 NC_004812.1 + 94156 0.73 0.42481
Target:  5'- cGCCUGGGCCagaaGGCGUCUUGGccaaAGUCc -3'
miRNA:   3'- -CGGGCUCGGggg-UCGCAGAACU----UCAG- -5'
21572 5' -58 NC_004812.1 + 34190 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 97022 0.75 0.35076
Target:  5'- cGCCCGcGCCCCCaucGGCGUCUUcGGGa- -3'
miRNA:   3'- -CGGGCuCGGGGG---UCGCAGAAcUUCag -5'
21572 5' -58 NC_004812.1 + 108999 0.76 0.293026
Target:  5'- cCCCGAGCCCgUCGGCGcgCUcGggGUCg -3'
miRNA:   3'- cGGGCUCGGG-GGUCGCa-GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 131188 0.66 0.850871
Target:  5'- cCCCGGGaCCCCCcuGCGguUCUacgaggUGAAGUg -3'
miRNA:   3'- cGGGCUC-GGGGGu-CGC--AGA------ACUUCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.