miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 126019 0.77 0.279803
Target:  5'- cGCCCGA-CCCCCGGCGggcgcUCUUcugcGAGGUCu -3'
miRNA:   3'- -CGGGCUcGGGGGUCGC-----AGAA----CUUCAG- -5'
21572 5' -58 NC_004812.1 + 91881 0.69 0.656655
Target:  5'- gGCCCGGgggcgcgcauGCCCgCGGCcUCgggGAAGUCg -3'
miRNA:   3'- -CGGGCU----------CGGGgGUCGcAGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 150156 0.69 0.676764
Target:  5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3'
miRNA:   3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5'
21572 5' -58 NC_004812.1 + 131188 0.66 0.850871
Target:  5'- cCCCGGGaCCCCCcuGCGguUCUacgaggUGAAGUg -3'
miRNA:   3'- cGGGCUC-GGGGGu-CGC--AGA------ACUUCAg -5'
21572 5' -58 NC_004812.1 + 94156 0.73 0.42481
Target:  5'- cGCCUGGGCCagaaGGCGUCUUGGccaaAGUCc -3'
miRNA:   3'- -CGGGCUCGGggg-UCGCAGAACU----UCAG- -5'
21572 5' -58 NC_004812.1 + 125854 0.72 0.497886
Target:  5'- cGCCCGcGGCCCCgGGCaUCgUGGAGcUCg -3'
miRNA:   3'- -CGGGC-UCGGGGgUCGcAGaACUUC-AG- -5'
21572 5' -58 NC_004812.1 + 94507 0.71 0.5463
Target:  5'- cGCCCGAGCaaCCCCAugcgcGCGUCagGcgcGGGUCg -3'
miRNA:   3'- -CGGGCUCG--GGGGU-----CGCAGaaC---UUCAG- -5'
21572 5' -58 NC_004812.1 + 148597 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 152419 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 40491 0.69 0.646568
Target:  5'- gGCCCGGGCCCCgagGGCGggcgCgggGGAGg- -3'
miRNA:   3'- -CGGGCUCGGGGg--UCGCa---Gaa-CUUCag -5'
21572 5' -58 NC_004812.1 + 152011 0.7 0.630409
Target:  5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3'
miRNA:   3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5'
21572 5' -58 NC_004812.1 + 47700 0.7 0.615261
Target:  5'- gGCCgCGGGCCCCCGgGCGUaCUggcUGGugcagcagaagcgGGUCa -3'
miRNA:   3'- -CGG-GCUCGGGGGU-CGCA-GA---ACU-------------UCAG- -5'
21572 5' -58 NC_004812.1 + 108999 0.76 0.293026
Target:  5'- cCCCGAGCCCgUCGGCGcgCUcGggGUCg -3'
miRNA:   3'- cGGGCUCGGG-GGUCGCa-GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 63533 0.7 0.63647
Target:  5'- gGCCCGAG-CUCCAGgGUCgu-GGGUCc -3'
miRNA:   3'- -CGGGCUCgGGGGUCgCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 97022 0.75 0.35076
Target:  5'- cGCCCGcGCCCCCaucGGCGUCUUcGGGa- -3'
miRNA:   3'- -CGGGCuCGGGGG---UCGCAGAAcUUCag -5'
21572 5' -58 NC_004812.1 + 19312 0.71 0.576068
Target:  5'- aCgCGGGCCCCCAGguaCGUgUaGAGGUCg -3'
miRNA:   3'- cGgGCUCGGGGGUC---GCAgAaCUUCAG- -5'
21572 5' -58 NC_004812.1 + 36654 0.69 0.646568
Target:  5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3'
miRNA:   3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5'
21572 5' -58 NC_004812.1 + 150295 0.69 0.676764
Target:  5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3'
miRNA:   3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5'
21572 5' -58 NC_004812.1 + 34190 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 44614 0.72 0.507425
Target:  5'- cCCCGccAGCCCCCcGCG-CUUGggGg- -3'
miRNA:   3'- cGGGC--UCGGGGGuCGCaGAACuuCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.