miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 85754 0.67 0.773783
Target:  5'- aGCCac-GCCCCCcGCGUCUccucgUGGGcGUCg -3'
miRNA:   3'- -CGGgcuCGGGGGuCGCAGA-----ACUU-CAG- -5'
21572 5' -58 NC_004812.1 + 108999 0.76 0.293026
Target:  5'- cCCCGAGCCCgUCGGCGcgCUcGggGUCg -3'
miRNA:   3'- cGGGCUCGGG-GGUCGCa-GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 126019 0.77 0.279803
Target:  5'- cGCCCGA-CCCCCGGCGggcgcUCUUcugcGAGGUCu -3'
miRNA:   3'- -CGGGCUcGGGGGUCGC-----AGAA----CUUCAG- -5'
21572 5' -58 NC_004812.1 + 148531 0.66 0.826654
Target:  5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3'
miRNA:   3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 106703 0.66 0.850871
Target:  5'- gGCgUCGGGCCCCgGGgGgccCUcGggGUCg -3'
miRNA:   3'- -CG-GGCUCGGGGgUCgCa--GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 94156 0.73 0.42481
Target:  5'- cGCCUGGGCCagaaGGCGUCUUGGccaaAGUCc -3'
miRNA:   3'- -CGGGCUCGGggg-UCGCAGAACU----UCAG- -5'
21572 5' -58 NC_004812.1 + 574 0.66 0.826654
Target:  5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3'
miRNA:   3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 21838 0.66 0.818227
Target:  5'- aCCCGAgggcgucgcGCCCUCGGCGUCcgacuccagggUUGcgucuGAGUCa -3'
miRNA:   3'- cGGGCU---------CGGGGGUCGCAG-----------AAC-----UUCAG- -5'
21572 5' -58 NC_004812.1 + 75029 0.66 0.808767
Target:  5'- cGCCCGAGCcgaCCCCcuCGUCaagcagaUUGAGGa- -3'
miRNA:   3'- -CGGGCUCG---GGGGucGCAG-------AACUUCag -5'
21572 5' -58 NC_004812.1 + 151561 0.67 0.782952
Target:  5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3'
miRNA:   3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5'
21572 5' -58 NC_004812.1 + 56920 0.67 0.773783
Target:  5'- -aCCGAGUCCCUGGCGgaggCgggGgcGUCu -3'
miRNA:   3'- cgGGCUCGGGGGUCGCa---Gaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 139859 0.67 0.755083
Target:  5'- gGCCCGcGGCCCCCggGGCGcCcUGc-GUCg -3'
miRNA:   3'- -CGGGC-UCGGGGG--UCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 4821 0.68 0.73596
Target:  5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3'
miRNA:   3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 1222 0.68 0.716486
Target:  5'- gGCCCG-GCCCCCGGgGUUccUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGa-ACuuCag -5'
21572 5' -58 NC_004812.1 + 150156 0.69 0.676764
Target:  5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3'
miRNA:   3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5'
21572 5' -58 NC_004812.1 + 63533 0.7 0.63647
Target:  5'- gGCCCGAG-CUCCAGgGUCgu-GGGUCc -3'
miRNA:   3'- -CGGGCUCgGGGGUCgCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 152419 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 94507 0.71 0.5463
Target:  5'- cGCCCGAGCaaCCCCAugcgcGCGUCagGcgcGGGUCg -3'
miRNA:   3'- -CGGGCUCG--GGGGU-----CGCAGaaC---UUCAG- -5'
21572 5' -58 NC_004812.1 + 75087 0.68 0.734994
Target:  5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3'
miRNA:   3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5'
21572 5' -58 NC_004812.1 + 14219 0.66 0.826654
Target:  5'- gGCCCc-GCCCCCGGCGgccacggcgCgccgggUGAuGUCg -3'
miRNA:   3'- -CGGGcuCGGGGGUCGCa--------Ga-----ACUuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.