miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 121518 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 117630 0.66 0.826654
Target:  5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3'
miRNA:   3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 75087 0.68 0.734994
Target:  5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3'
miRNA:   3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5'
21572 5' -58 NC_004812.1 + 102050 0.72 0.497886
Target:  5'- uCCCGcGGCgCCCCGGCGcCgucGGAGUCg -3'
miRNA:   3'- cGGGC-UCG-GGGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 126082 0.66 0.826654
Target:  5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3'
miRNA:   3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 61427 0.68 0.726262
Target:  5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3'
miRNA:   3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5'
21572 5' -58 NC_004812.1 + 126789 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 103147 0.68 0.716486
Target:  5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3'
miRNA:   3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 2221 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 105241 0.66 0.809635
Target:  5'- aCCCGGgcgggcgacGCgUCCGGUGUUaUGAAGUCa -3'
miRNA:   3'- cGGGCU---------CGgGGGUCGCAGaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 106578 0.66 0.809635
Target:  5'- cGCCCGGGCCgggcgcagaCGGCGcgaUGGAGUCu -3'
miRNA:   3'- -CGGGCUCGGgg-------GUCGCagaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 35745 0.66 0.809635
Target:  5'- cCCCGcuacagcgccAGCCCCCgcaggggggaGGCGUCguagaUGAGGUa -3'
miRNA:   3'- cGGGC----------UCGGGGG----------UCGCAGa----ACUUCAg -5'
21572 5' -58 NC_004812.1 + 538 0.66 0.815666
Target:  5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3'
miRNA:   3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 111362 0.66 0.817375
Target:  5'- cCCCGAGaCCCCAccgcgcuGUGUCgcggUGAcGUCa -3'
miRNA:   3'- cGGGCUCgGGGGU-------CGCAGa---ACUuCAG- -5'
21572 5' -58 NC_004812.1 + 136948 0.66 0.818227
Target:  5'- cCCCGcGGCCCCCGGCGgUCUc------ -3'
miRNA:   3'- cGGGC-UCGGGGGUCGC-AGAacuucag -5'
21572 5' -58 NC_004812.1 + 143231 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 143264 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 22366 0.66 0.825819
Target:  5'- gGCCUGAcgcggcaaagcgcGCCgCCAGCGUCU--GGGUa -3'
miRNA:   3'- -CGGGCU-------------CGGgGGUCGCAGAacUUCAg -5'
21572 5' -58 NC_004812.1 + 14219 0.66 0.826654
Target:  5'- gGCCCc-GCCCCCGGCGgccacggcgCgccgggUGAuGUCg -3'
miRNA:   3'- -CGGGcuCGGGGGUCGCa--------Ga-----ACUuCAG- -5'
21572 5' -58 NC_004812.1 + 24042 0.66 0.826654
Target:  5'- cGCCCGcauccagcaccGCCCCCGGCcgGUCgaGGAGcCc -3'
miRNA:   3'- -CGGGCu----------CGGGGGUCG--CAGaaCUUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.