miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 3' -56 NC_004812.1 + 151917 0.66 0.914645
Target:  5'- -cCGCCCgGGGcUCUggggcgcGCCGGAGgUGg -3'
miRNA:   3'- gaGCGGGaCCC-AGAa------UGGCUUCgACa -5'
21573 3' -56 NC_004812.1 + 26409 0.66 0.914645
Target:  5'- -cCGCCCgGGGcUCUggggcgcGCCGGAGgUGg -3'
miRNA:   3'- gaGCGGGaCCC-AGAa------UGGCUUCgACa -5'
21573 3' -56 NC_004812.1 + 122182 0.66 0.908667
Target:  5'- cCUgGgCCUGGGUCUggugGgCG-GGCUGUc -3'
miRNA:   3'- -GAgCgGGACCCAGAa---UgGCuUCGACA- -5'
21573 3' -56 NC_004812.1 + 116429 0.66 0.908667
Target:  5'- -gCGCCCUGGGgacggcCUgcggggcgGCCGucgcGCUGUg -3'
miRNA:   3'- gaGCGGGACCCa-----GAa-------UGGCuu--CGACA- -5'
21573 3' -56 NC_004812.1 + 153083 0.66 0.908667
Target:  5'- cCUgGgCCUGGGUCUggugGgCG-GGCUGUc -3'
miRNA:   3'- -GAgCgGGACCCAGAa---UgGCuUCGACA- -5'
21573 3' -56 NC_004812.1 + 121260 0.66 0.896004
Target:  5'- gUCGCCCcggacacccUGGGUCUgcuccuggcgUACCgGAGGCg-- -3'
miRNA:   3'- gAGCGGG---------ACCCAGA----------AUGG-CUUCGaca -5'
21573 3' -56 NC_004812.1 + 9927 0.66 0.896004
Target:  5'- -gCGCCC--GGUCUUggaACCGGAGCUc- -3'
miRNA:   3'- gaGCGGGacCCAGAA---UGGCUUCGAca -5'
21573 3' -56 NC_004812.1 + 31192 0.66 0.889324
Target:  5'- gUCGUCCgcaGGGUCgucccGCUGguGCUGUa -3'
miRNA:   3'- gAGCGGGa--CCCAGaa---UGGCuuCGACA- -5'
21573 3' -56 NC_004812.1 + 38327 0.66 0.882416
Target:  5'- -gCGCCCgUGGG-CgaGCCGgcGCUGc -3'
miRNA:   3'- gaGCGGG-ACCCaGaaUGGCuuCGACa -5'
21573 3' -56 NC_004812.1 + 71289 0.66 0.882416
Target:  5'- aUCGCcgaCCUGGGUCUgcCCG-GGCUu- -3'
miRNA:   3'- gAGCG---GGACCCAGAauGGCuUCGAca -5'
21573 3' -56 NC_004812.1 + 78211 0.67 0.867936
Target:  5'- gCUCGCCCUucccGGG-CUcACCcGGGCUGc -3'
miRNA:   3'- -GAGCGGGA----CCCaGAaUGGcUUCGACa -5'
21573 3' -56 NC_004812.1 + 7639 0.67 0.867936
Target:  5'- -gCGgCCgGGGUCgggGCgCGAAGCUGc -3'
miRNA:   3'- gaGCgGGaCCCAGaa-UG-GCUUCGACa -5'
21573 3' -56 NC_004812.1 + 38540 0.67 0.867936
Target:  5'- -gCGgCCgGGGUCgggGCgCGAAGCUGc -3'
miRNA:   3'- gaGCgGGaCCCAGaa-UG-GCUUCGACa -5'
21573 3' -56 NC_004812.1 + 106271 0.67 0.852604
Target:  5'- gUgGCCCUcGGUCUUAUCGAcuccGGCUa- -3'
miRNA:   3'- gAgCGGGAcCCAGAAUGGCU----UCGAca -5'
21573 3' -56 NC_004812.1 + 54392 0.67 0.844634
Target:  5'- -gCGCCCgcGGGcacgGCCGggGCUGc -3'
miRNA:   3'- gaGCGGGa-CCCagaaUGGCuuCGACa -5'
21573 3' -56 NC_004812.1 + 136967 0.68 0.819589
Target:  5'- cCUCGCCCUGGcggcccacGUCgccgcgagACCGGacgcgcGGCUGg -3'
miRNA:   3'- -GAGCGGGACC--------CAGaa------UGGCU------UCGACa -5'
21573 3' -56 NC_004812.1 + 94834 0.69 0.771724
Target:  5'- uUCGUCCUGGGgcacGCCGccgccggacugacgGAGCUGUg -3'
miRNA:   3'- gAGCGGGACCCagaaUGGC--------------UUCGACA- -5'
21573 3' -56 NC_004812.1 + 138934 0.69 0.76511
Target:  5'- uUCGCCCUGGGcgggCgggACCGAgagGGCg-- -3'
miRNA:   3'- gAGCGGGACCCa---Gaa-UGGCU---UCGaca -5'
21573 3' -56 NC_004812.1 + 69686 0.69 0.76511
Target:  5'- aCUCGUCCUGGGg---GCCGcgcucuacuGGCUGa -3'
miRNA:   3'- -GAGCGGGACCCagaaUGGCu--------UCGACa -5'
21573 3' -56 NC_004812.1 + 138446 0.69 0.755562
Target:  5'- aUCGCCCUcaGGUggUACgGggGCUGUc -3'
miRNA:   3'- gAGCGGGAc-CCAgaAUGgCuuCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.