Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21573 | 3' | -56 | NC_004812.1 | + | 13220 | 0.91 | 0.04581 |
Target: 5'- uCUCGCCCUGGGUCUU-CaCGAAGCUGUc -3' miRNA: 3'- -GAGCGGGACCCAGAAuG-GCUUCGACA- -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 86120 | 0.72 | 0.573758 |
Target: 5'- aCUC-CCCUGGGUCaccGCCGAucgccguugcuGGCUGg -3' miRNA: 3'- -GAGcGGGACCCAGaa-UGGCU-----------UCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 73968 | 0.72 | 0.602281 |
Target: 5'- gUCGCCCUGGGcgUCgcucagggccaGCUGGAGCUGc -3' miRNA: 3'- gAGCGGGACCC--AGaa---------UGGCUUCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 139081 | 0.71 | 0.644314 |
Target: 5'- gCUgGCCCUGGGUUgcacggggaGCCGAaagacgcGGCUGg -3' miRNA: 3'- -GAgCGGGACCCAGaa-------UGGCU-------UCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 60736 | 0.71 | 0.676015 |
Target: 5'- -cCGCUCgGGGUCgagACCGAGGCg-- -3' miRNA: 3'- gaGCGGGaCCCAGaa-UGGCUUCGaca -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 46785 | 0.71 | 0.676015 |
Target: 5'- uCUCGCCCc-GGUCgaGCCGguGCUGg -3' miRNA: 3'- -GAGCGGGacCCAGaaUGGCuuCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 136439 | 0.7 | 0.68618 |
Target: 5'- gCUCGCCC-GGGUCgggGCCcGAGCg-- -3' miRNA: 3'- -GAGCGGGaCCCAGaa-UGGcUUCGaca -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 138446 | 0.69 | 0.755562 |
Target: 5'- aUCGCCCUcaGGUggUACgGggGCUGUc -3' miRNA: 3'- gAGCGGGAc-CCAgaAUGgCuuCGACA- -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 69686 | 0.69 | 0.76511 |
Target: 5'- aCUCGUCCUGGGg---GCCGcgcucuacuGGCUGa -3' miRNA: 3'- -GAGCGGGACCCagaaUGGCu--------UCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 138934 | 0.69 | 0.76511 |
Target: 5'- uUCGCCCUGGGcgggCgggACCGAgagGGCg-- -3' miRNA: 3'- gAGCGGGACCCa---Gaa-UGGCU---UCGaca -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 94834 | 0.69 | 0.771724 |
Target: 5'- uUCGUCCUGGGgcacGCCGccgccggacugacgGAGCUGUg -3' miRNA: 3'- gAGCGGGACCCagaaUGGC--------------UUCGACA- -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 136967 | 0.68 | 0.819589 |
Target: 5'- cCUCGCCCUGGcggcccacGUCgccgcgagACCGGacgcgcGGCUGg -3' miRNA: 3'- -GAGCGGGACC--------CAGaa------UGGCU------UCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 54392 | 0.67 | 0.844634 |
Target: 5'- -gCGCCCgcGGGcacgGCCGggGCUGc -3' miRNA: 3'- gaGCGGGa-CCCagaaUGGCuuCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 106271 | 0.67 | 0.852604 |
Target: 5'- gUgGCCCUcGGUCUUAUCGAcuccGGCUa- -3' miRNA: 3'- gAgCGGGAcCCAGAAUGGCU----UCGAca -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 7639 | 0.67 | 0.867936 |
Target: 5'- -gCGgCCgGGGUCgggGCgCGAAGCUGc -3' miRNA: 3'- gaGCgGGaCCCAGaa-UG-GCUUCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 78211 | 0.67 | 0.867936 |
Target: 5'- gCUCGCCCUucccGGG-CUcACCcGGGCUGc -3' miRNA: 3'- -GAGCGGGA----CCCaGAaUGGcUUCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 38540 | 0.67 | 0.867936 |
Target: 5'- -gCGgCCgGGGUCgggGCgCGAAGCUGc -3' miRNA: 3'- gaGCgGGaCCCAGaa-UG-GCUUCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 38327 | 0.66 | 0.882416 |
Target: 5'- -gCGCCCgUGGG-CgaGCCGgcGCUGc -3' miRNA: 3'- gaGCGGG-ACCCaGaaUGGCuuCGACa -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 71289 | 0.66 | 0.882416 |
Target: 5'- aUCGCcgaCCUGGGUCUgcCCG-GGCUu- -3' miRNA: 3'- gAGCG---GGACCCAGAauGGCuUCGAca -5' |
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21573 | 3' | -56 | NC_004812.1 | + | 31192 | 0.66 | 0.889324 |
Target: 5'- gUCGUCCgcaGGGUCgucccGCUGguGCUGUa -3' miRNA: 3'- gAGCGGGa--CCCAGaa---UGGCuuCGACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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