miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 37818 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 73328 0.66 0.887365
Target:  5'- aGCGCGGCCagCGccGcGCuCGGAAGG-Ca -3'
miRNA:   3'- -CGUGCCGGa-GCuuCcUG-GCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 20117 0.66 0.887365
Target:  5'- cGCAgCGGCgCgCGggGGAgCGGAccGGGcCc -3'
miRNA:   3'- -CGU-GCCG-GaGCuuCCUgGCCU--UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 6917 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 11337 0.66 0.887365
Target:  5'- gGCugGGCCgaCGGuguGGGCucgaCGGGAGGg- -3'
miRNA:   3'- -CGugCCGGa-GCUu--CCUG----GCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 50467 0.66 0.887365
Target:  5'- aGCuCGGCCUCGgcGGgcgcguguggacGCCGGGcgccgAGG-Cg -3'
miRNA:   3'- -CGuGCCGGAGCuuCC------------UGGCCU-----UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 66756 0.66 0.885338
Target:  5'- cGCGcCGGCCUCGcgcacgaauguggcGAGcGCCGu-GGGUCg -3'
miRNA:   3'- -CGU-GCCGGAGC--------------UUCcUGGCcuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 25279 0.66 0.881224
Target:  5'- cGCACgccgGGCCgggcgaucgagcggaCGAAGGcCCGGAAGcUCa -3'
miRNA:   3'- -CGUG----CCGGa--------------GCUUCCuGGCCUUCcAG- -5'
21573 5' -57.4 NC_004812.1 + 57988 0.66 0.880531
Target:  5'- aGCGCGGCCgCGAcGG-CCGcGAcGGcCa -3'
miRNA:   3'- -CGUGCCGGaGCUuCCuGGC-CUuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 32234 0.66 0.880531
Target:  5'- cGgGCGGUCcgCGGGcGGuccGCCGGAAGGcCg -3'
miRNA:   3'- -CgUGCCGGa-GCUU-CC---UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 125703 0.66 0.880531
Target:  5'- cGCGCGcGCCgccgggGGAGGGCCc--GGGUCg -3'
miRNA:   3'- -CGUGC-CGGag----CUUCCUGGccuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 98055 0.66 0.880531
Target:  5'- gGCGcCGG-CUCGggGGcgGCCGGAgccGGGcCc -3'
miRNA:   3'- -CGU-GCCgGAGCuuCC--UGGCCU---UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 194 0.66 0.880531
Target:  5'- cGCGCGcGCCgccgggGGAGGGCCc--GGGUCg -3'
miRNA:   3'- -CGUGC-CGGag----CUUCCUGGccuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 98595 0.66 0.880531
Target:  5'- uGCGCGGCaucaUCGccGAGGGCgGGGc-GUCg -3'
miRNA:   3'- -CGUGCCGg---AGC--UUCCUGgCCUucCAG- -5'
21573 5' -57.4 NC_004812.1 + 26396 0.66 0.880531
Target:  5'- gGCGC-GCUUCG-GGGAucgcCCGuGggGGUCg -3'
miRNA:   3'- -CGUGcCGGAGCuUCCU----GGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 107957 0.66 0.880531
Target:  5'- cGCGCGGCgaggCGcGGGAUCGGAuagagAGG-Cg -3'
miRNA:   3'- -CGUGCCGga--GCuUCCUGGCCU-----UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 132772 0.66 0.880531
Target:  5'- aGgGCGGCgC-CGGGccGGGCCGGccccGGGUCg -3'
miRNA:   3'- -CgUGCCG-GaGCUU--CCUGGCCu---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 1333 0.66 0.880531
Target:  5'- cGgGCGGUCcgCGGGcGGuccGCCGGAAGGcCg -3'
miRNA:   3'- -CgUGCCGGa-GCUU-CC---UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 49605 0.66 0.879836
Target:  5'- gGCACGGCacggUGGgaggggcgcccgcGGGGCgGGAGGGg- -3'
miRNA:   3'- -CGUGCCGga--GCU-------------UCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 39110 0.66 0.878439
Target:  5'- -aGCGGCCgggggcccgcgUCGGAcgcgcccggcggccGGGCCGG-GGGUCc -3'
miRNA:   3'- cgUGCCGG-----------AGCUU--------------CCUGGCCuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.