miRNA display CGI


Results 1 - 20 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 35094 0.66 0.865492
Target:  5'- cGCGCGaGCgaCGAGGGcagcgucACCGGGaaccgcagcgucAGGUCc -3'
miRNA:   3'- -CGUGC-CGgaGCUUCC-------UGGCCU------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 68427 0.66 0.873484
Target:  5'- cCGCGGCCgagaGGAGGGacgccCCGG--GGUCg -3'
miRNA:   3'- cGUGCCGGag--CUUCCU-----GGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91592 0.66 0.857253
Target:  5'- uGCugGGUCgcgcgucggaaaUGggGGACCcGGggGGg- -3'
miRNA:   3'- -CGugCCGGa-----------GCuuCCUGG-CCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 71848 0.66 0.851112
Target:  5'- gGCGucucCGGCC-CGggGGAU--GggGGUCg -3'
miRNA:   3'- -CGU----GCCGGaGCuuCCUGgcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 70902 0.66 0.866228
Target:  5'- gGCGgGGaUCUCGcgcgGGGGGgCGGGAGGUg -3'
miRNA:   3'- -CGUgCC-GGAGC----UUCCUgGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 44764 0.66 0.858769
Target:  5'- -gGCGGCC-CGAugAGGGC--GAGGGUCu -3'
miRNA:   3'- cgUGCCGGaGCU--UCCUGgcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 37818 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 123576 0.66 0.851112
Target:  5'- gGCGCGGCCgggcUCGAGucguccgucgucGGGCgGGcgggcggcgGAGGUCc -3'
miRNA:   3'- -CGUGCCGG----AGCUU------------CCUGgCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 54604 0.66 0.866228
Target:  5'- gGCGUGGCCgCGGggacgggcGGGGCCGGAgAGGcCc -3'
miRNA:   3'- -CGUGCCGGaGCU--------UCCUGGCCU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 58401 0.66 0.858769
Target:  5'- -gGCGGCCgccgccUGGAGG-CUGGggGGg- -3'
miRNA:   3'- cgUGCCGGa-----GCUUCCuGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 64352 0.66 0.869156
Target:  5'- gGCG-GGCCUgGAGccGGACCGGGacuaccucgccaucgAGGUg -3'
miRNA:   3'- -CGUgCCGGAgCUU--CCUGGCCU---------------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 83551 0.66 0.873484
Target:  5'- aGCGCGGUCUCcgGGAGG-CCGuGcgccccgugcAGGUCg -3'
miRNA:   3'- -CGUGCCGGAG--CUUCCuGGCcU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 74767 0.66 0.858769
Target:  5'- cGCGCGGCCcCGAGGGccuCCGGc----- -3'
miRNA:   3'- -CGUGCCGGaGCUUCCu--GGCCuuccag -5'
21573 5' -57.4 NC_004812.1 + 124055 0.66 0.866228
Target:  5'- cCGCGGCCaaCGggGGAgCGGcgcGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUgGCCuucCAG- -5'
21573 5' -57.4 NC_004812.1 + 62477 0.66 0.866228
Target:  5'- cGCGCGcGCCUCu--GGGCCGGcgcGGa- -3'
miRNA:   3'- -CGUGC-CGGAGcuuCCUGGCCuu-CCag -5'
21573 5' -57.4 NC_004812.1 + 6290 0.66 0.861777
Target:  5'- gGCACGGCCa-GggGGAgCGGcgcccccgggcacgcGGGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCUgGCC---------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 54676 0.66 0.850336
Target:  5'- -aGCGGCCgggUCGcggcgaggagggcGAGGGCCaGGAGGGg- -3'
miRNA:   3'- cgUGCCGG---AGC-------------UUCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 96683 0.66 0.851112
Target:  5'- cCACcGCgCUCGAGuGGGCCGGcaucgccgcGGGGUCc -3'
miRNA:   3'- cGUGcCG-GAGCUU-CCUGGCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 79613 0.66 0.873484
Target:  5'- aGCACGGCCgcggUGAGGGcgGCCGu--GGcCg -3'
miRNA:   3'- -CGUGCCGGa---GCUUCC--UGGCcuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 70872 0.66 0.851112
Target:  5'- gGCGUGGCUgcgCGGggGGGGCgGGGAGGg- -3'
miRNA:   3'- -CGUGCCGGa--GCU--UCCUGgCCUUCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.