miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 98055 0.66 0.880531
Target:  5'- gGCGcCGG-CUCGggGGcgGCCGGAgccGGGcCc -3'
miRNA:   3'- -CGU-GCCgGAGCuuCC--UGGCCU---UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 68427 0.66 0.873484
Target:  5'- cCGCGGCCgagaGGAGGGacgccCCGG--GGUCg -3'
miRNA:   3'- cGUGCCGGag--CUUCCU-----GGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 58401 0.66 0.858769
Target:  5'- -gGCGGCCgccgccUGGAGG-CUGGggGGg- -3'
miRNA:   3'- cgUGCCGGa-----GCUUCCuGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 26396 0.66 0.880531
Target:  5'- gGCGC-GCUUCG-GGGAucgcCCGuGggGGUCg -3'
miRNA:   3'- -CGUGcCGGAGCuUCCU----GGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44764 0.66 0.858769
Target:  5'- -gGCGGCC-CGAugAGGGC--GAGGGUCu -3'
miRNA:   3'- cgUGCCGGaGCU--UCCUGgcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 148984 0.66 0.873484
Target:  5'- cGCGCGGC---GAGGGAa-GGAGGGUg -3'
miRNA:   3'- -CGUGCCGgagCUUCCUggCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 70872 0.66 0.851112
Target:  5'- gGCGUGGCUgcgCGGggGGGGCgGGGAGGg- -3'
miRNA:   3'- -CGUGCCGGa--GCU--UCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 12375 0.66 0.851112
Target:  5'- cGCcCGGCCgCGc--GGCCGGGAGGg- -3'
miRNA:   3'- -CGuGCCGGaGCuucCUGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 124055 0.66 0.866228
Target:  5'- cCGCGGCCaaCGggGGAgCGGcgcGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUgGCCuucCAG- -5'
21573 5' -57.4 NC_004812.1 + 79613 0.66 0.873484
Target:  5'- aGCACGGCCgcggUGAGGGcgGCCGu--GGcCg -3'
miRNA:   3'- -CGUGCCGGa---GCUUCC--UGGCcuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 96683 0.66 0.851112
Target:  5'- cCACcGCgCUCGAGuGGGCCGGcaucgccgcGGGGUCc -3'
miRNA:   3'- cGUGcCG-GAGCUU-CCUGGCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 54676 0.66 0.850336
Target:  5'- -aGCGGCCgggUCGcggcgaggagggcGAGGGCCaGGAGGGg- -3'
miRNA:   3'- cgUGCCGG---AGC-------------UUCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 6917 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 104049 0.66 0.856493
Target:  5'- -gAgGGCCUCG-GGGACgugggccgcgcgguCGGcAAGGUCg -3'
miRNA:   3'- cgUgCCGGAGCuUCCUG--------------GCC-UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 92212 0.66 0.873484
Target:  5'- cGCccuCaGCCUCGccucGGGGCCGGGagaGGGUg -3'
miRNA:   3'- -CGu--GcCGGAGCu---UCCUGGCCU---UCCAg -5'
21573 5' -57.4 NC_004812.1 + 1333 0.66 0.880531
Target:  5'- cGgGCGGUCcgCGGGcGGuccGCCGGAAGGcCg -3'
miRNA:   3'- -CgUGCCGGa-GCUU-CC---UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 122214 0.66 0.873484
Target:  5'- gGCGCcGCCcCGggGGcggGCgCGGggGGcUCg -3'
miRNA:   3'- -CGUGcCGGaGCuuCC---UG-GCCuuCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 50467 0.66 0.887365
Target:  5'- aGCuCGGCCUCGgcGGgcgcguguggacGCCGGGcgccgAGG-Cg -3'
miRNA:   3'- -CGuGCCGGAGCuuCC------------UGGCCU-----UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 8209 0.66 0.878439
Target:  5'- -aGCGGCCgggggcccgcgUCGGAcgcgcccggcggccGGGCCGG-GGGUCc -3'
miRNA:   3'- cgUGCCGG-----------AGCUU--------------CCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 74767 0.66 0.858769
Target:  5'- cGCGCGGCCcCGAGGGccuCCGGc----- -3'
miRNA:   3'- -CGUGCCGGaGCUUCCu--GGCCuuccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.