miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 37191 0.66 0.861777
Target:  5'- gGCACGGCCa-GggGGAgCGGcgcccccgggcacgcGGGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCUgGCC---------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 16305 0.66 0.858012
Target:  5'- cGCAUGGCggaCGAgcGGGGgCGGAgaccgauGGGUCg -3'
miRNA:   3'- -CGUGCCGga-GCU--UCCUgGCCU-------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 98007 0.67 0.846425
Target:  5'- gGCuCGGgCUCG-AGGuCCGGGuccgguuccgguuccGGGUCg -3'
miRNA:   3'- -CGuGCCgGAGCuUCCuGGCCU---------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33179 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 96512 0.67 0.798741
Target:  5'- cCACGGCCaUCGGcgccuaccuggcgcGGGccGCCGGccuGGUCg -3'
miRNA:   3'- cGUGCCGG-AGCU--------------UCC--UGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 33152 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 145819 0.67 0.818632
Target:  5'- cGUGCGGCCccgccggagCGAAGG-CCGGGcccGGGg- -3'
miRNA:   3'- -CGUGCCGGa--------GCUUCCuGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 130472 0.67 0.823683
Target:  5'- cGgGCGGCCggcggcggcgaggCGggGGGCgaCGGGuccGGGUCc -3'
miRNA:   3'- -CgUGCCGGa------------GCuuCCUG--GCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 26483 0.67 0.801381
Target:  5'- uGCGCGGg--CGggGGAcgaucgguCCGcGggGGUCg -3'
miRNA:   3'- -CGUGCCggaGCuuCCU--------GGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 54521 0.67 0.843263
Target:  5'- gGC-CGGCCUCGAcGGACgCGuu-GGUg -3'
miRNA:   3'- -CGuGCCGGAGCUuCCUG-GCcuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 121884 0.67 0.843263
Target:  5'- gGCGgGGCCUggggCGggGccgcaGGCCGGGcgcgggccugAGGUCg -3'
miRNA:   3'- -CGUgCCGGA----GCuuC-----CUGGCCU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 130370 0.67 0.843263
Target:  5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3'
miRNA:   3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 46272 0.67 0.801381
Target:  5'- gGCGCGGCaggauccgcgCGggGcGGCCGG-AGGcCg -3'
miRNA:   3'- -CGUGCCGga--------GCuuC-CUGGCCuUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 124659 0.67 0.835229
Target:  5'- cCGCGGCCgggcaGGAGGAgaCCGcGGGGUUg -3'
miRNA:   3'- cGUGCCGGag---CUUCCU--GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 114691 0.67 0.801381
Target:  5'- -gGCGGCCgc--GGGACCGGAAugccGUCg -3'
miRNA:   3'- cgUGCCGGagcuUCCUGGCCUUc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 52042 0.67 0.835229
Target:  5'- cGCACGGCCguggCGAacacgcGGGcaucggccACCGG-GGGUg -3'
miRNA:   3'- -CGUGCCGGa---GCU------UCC--------UGGCCuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 45252 0.67 0.835229
Target:  5'- aGCugGGCgaCGAgcuggGGGGcCCGcGGGGUCg -3'
miRNA:   3'- -CGugCCGgaGCU-----UCCU-GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 123134 0.67 0.843263
Target:  5'- -gGCGGCgUCGGAGG-CgGGGucGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCuGgCCUucCAG- -5'
21573 5' -57.4 NC_004812.1 + 97232 0.67 0.801381
Target:  5'- cGUggGGCCUCGcgcccugcGGGGCCGGguGGa- -3'
miRNA:   3'- -CGugCCGGAGCu-------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 2278 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.