Results 81 - 100 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21573 | 5' | -57.4 | NC_004812.1 | + | 91193 | 0.67 | 0.810085 |
Target: 5'- aCGCGGgCUCGggGG--CGGggGG-Cg -3' miRNA: 3'- cGUGCCgGAGCuuCCugGCCuuCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 145819 | 0.67 | 0.818632 |
Target: 5'- cGUGCGGCCccgccggagCGAAGG-CCGGGcccGGGg- -3' miRNA: 3'- -CGUGCCGGa--------GCUUCCuGGCCU---UCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 19890 | 0.67 | 0.827016 |
Target: 5'- gGCGCGGCggCGggGGACgCGGc-GGcCc -3' miRNA: 3'- -CGUGCCGgaGCuuCCUG-GCCuuCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 155298 | 0.67 | 0.827016 |
Target: 5'- gGCGCGGC-----GGGGCCcGggGGUCg -3' miRNA: 3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 5471 | 0.67 | 0.827016 |
Target: 5'- cCAgGGCCaCGggGGGgCG-AGGGUCa -3' miRNA: 3'- cGUgCCGGaGCuuCCUgGCcUUCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 154481 | 0.67 | 0.827016 |
Target: 5'- cGCGgGGCCUCcccgGAcuGGGACUGGGacuGGGa- -3' miRNA: 3'- -CGUgCCGGAG----CU--UCCUGGCCU---UCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 9839 | 0.67 | 0.827845 |
Target: 5'- cGUugGGCCUCGAcgacgcucacgccgAccguccgcccgccuuGGACUGGAcgGGGUUu -3' miRNA: 3'- -CGugCCGGAGCU--------------U---------------CCUGGCCU--UCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 130370 | 0.67 | 0.843263 |
Target: 5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3' miRNA: 3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 154515 | 0.67 | 0.843263 |
Target: 5'- aGCGCGGCC-CGGgccgccccgAGGACugguagacgCGGggGG-Cg -3' miRNA: 3'- -CGUGCCGGaGCU---------UCCUG---------GCCuuCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 54521 | 0.67 | 0.843263 |
Target: 5'- gGC-CGGCCUCGAcGGACgCGuu-GGUg -3' miRNA: 3'- -CGuGCCGGAGCUuCCUG-GCcuuCCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 123080 | 0.67 | 0.818632 |
Target: 5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3' miRNA: 3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 98778 | 0.67 | 0.818632 |
Target: 5'- aGCGaGGCCUCGuaguGGGGCgaCGGAccccGGUCc -3' miRNA: 3'- -CGUgCCGGAGCu---UCCUG--GCCUu---CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 30737 | 0.67 | 0.810085 |
Target: 5'- aGCGgGGCgggaGggGGACgGGAGGGg- -3' miRNA: 3'- -CGUgCCGgag-CuuCCUGgCCUUCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 152540 | 0.67 | 0.801381 |
Target: 5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3' miRNA: 3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 26483 | 0.67 | 0.801381 |
Target: 5'- uGCGCGGg--CGggGGAcgaucgguCCGcGggGGUCg -3' miRNA: 3'- -CGUGCCggaGCuuCCU--------GGC-CuuCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 121639 | 0.67 | 0.801381 |
Target: 5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3' miRNA: 3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 26231 | 0.67 | 0.810085 |
Target: 5'- -gGCGGgaCUCGAGGGGCCGGucuccgaccGGGa- -3' miRNA: 3'- cgUGCCg-GAGCUUCCUGGCCu--------UCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 68248 | 0.67 | 0.810085 |
Target: 5'- gGCcuCGGCCUCGAcguccucguccAGGGCCccGGAGGcCg -3' miRNA: 3'- -CGu-GCCGGAGCU-----------UCCUGGc-CUUCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 129724 | 0.67 | 0.810085 |
Target: 5'- cCGCGGCggCGucGGGCCGGggGcGg- -3' miRNA: 3'- cGUGCCGgaGCuuCCUGGCCuuC-Cag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 103957 | 0.67 | 0.818632 |
Target: 5'- -gAgGGCCgccgGggGGACCGGAacGGGg- -3' miRNA: 3'- cgUgCCGGag--CuuCCUGGCCU--UCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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