miRNA display CGI


Results 101 - 120 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 5471 0.67 0.827016
Target:  5'- cCAgGGCCaCGggGGGgCG-AGGGUCa -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 19890 0.67 0.827016
Target:  5'- gGCGCGGCggCGggGGACgCGGc-GGcCc -3'
miRNA:   3'- -CGUGCCGgaGCuuCCUG-GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 33179 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 152540 0.67 0.801381
Target:  5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3'
miRNA:   3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5'
21573 5' -57.4 NC_004812.1 + 131453 0.67 0.810085
Target:  5'- uGCuCGGCCUUGGaccGGGACCuGGuGGGc- -3'
miRNA:   3'- -CGuGCCGGAGCU---UCCUGG-CCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 130725 0.67 0.843263
Target:  5'- gGCGCGGgCgccgCGGAGGGCCGGccGc-- -3'
miRNA:   3'- -CGUGCCgGa---GCUUCCUGGCCuuCcag -5'
21573 5' -57.4 NC_004812.1 + 40956 0.67 0.843263
Target:  5'- gGUGCuGGCCUaCGAGGGAUcucgccacugCGGccGGUCu -3'
miRNA:   3'- -CGUG-CCGGA-GCUUCCUG----------GCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 115728 0.67 0.835229
Target:  5'- cGC-CGGCCgggcguauaUGAAuGGCCGGAggaGGGUCg -3'
miRNA:   3'- -CGuGCCGGa--------GCUUcCUGGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 114691 0.67 0.801381
Target:  5'- -gGCGGCCgc--GGGACCGGAAugccGUCg -3'
miRNA:   3'- cgUGCCGGagcuUCCUGGCCUUc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 96512 0.67 0.798741
Target:  5'- cCACGGCCaUCGGcgccuaccuggcgcGGGccGCCGGccuGGUCg -3'
miRNA:   3'- cGUGCCGG-AGCU--------------UCC--UGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 29006 0.67 0.843263
Target:  5'- aGCGCGGCC-CGGgccgccccgAGGACugguagacgCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCUG---------GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 75933 0.67 0.843263
Target:  5'- cCAgGGaCCU-GGAGGugCGGGAGGa- -3'
miRNA:   3'- cGUgCC-GGAgCUUCCugGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 28972 0.67 0.827016
Target:  5'- cGCGgGGCCUCcccgGAcuGGGACUGGGacuGGGa- -3'
miRNA:   3'- -CGUgCCGGAG----CU--UCCUGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 119571 0.67 0.835229
Target:  5'- uCAUGGCCUCccagcaccuGGACCaGAcGGUCg -3'
miRNA:   3'- cGUGCCGGAGcuu------CCUGGcCUuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 155560 0.67 0.835229
Target:  5'- cCGCGGCCgggcaGGAGGAgaCCGcGGGGUUg -3'
miRNA:   3'- cGUGCCGGag---CUUCCU--GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 29790 0.67 0.827016
Target:  5'- gGCGCGGC-----GGGGCCcGggGGUCg -3'
miRNA:   3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 13403 0.67 0.827016
Target:  5'- gGCGCGGC---GggGGugacgGCCGGAGGGg- -3'
miRNA:   3'- -CGUGCCGgagCuuCC-----UGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 60008 0.67 0.827016
Target:  5'- aGCACGGggaCCgUCGggGGguagccgaccaGCCGGcAGGUg -3'
miRNA:   3'- -CGUGCC---GG-AGCuuCC-----------UGGCCuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 152863 0.67 0.818632
Target:  5'- gGCugGGCCUgagCGgcGGGCCuGGGcuGGGcCu -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUGG-CCU--UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 153981 0.67 0.818632
Target:  5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3'
miRNA:   3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.