miRNA display CGI


Results 121 - 140 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 152540 0.67 0.801381
Target:  5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3'
miRNA:   3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5'
21573 5' -57.4 NC_004812.1 + 91193 0.67 0.810085
Target:  5'- aCGCGGgCUCGggGG--CGGggGG-Cg -3'
miRNA:   3'- cGUGCCgGAGCuuCCugGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 131453 0.67 0.810085
Target:  5'- uGCuCGGCCUUGGaccGGGACCuGGuGGGc- -3'
miRNA:   3'- -CGuGCCGGAGCU---UCCUGG-CCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 5389 0.67 0.810085
Target:  5'- uCGCGGCg-CG--GGGCCGGggGcGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 26094 0.67 0.810085
Target:  5'- gGCcuCGGaCUCGGAGGACuCGGAGGa-- -3'
miRNA:   3'- -CGu-GCCgGAGCUUCCUG-GCCUUCcag -5'
21573 5' -57.4 NC_004812.1 + 19291 0.67 0.816085
Target:  5'- uGCGCGGUgUCGAGGGGgcgaacgcgggcccCCaGGuacguguaGAGGUCg -3'
miRNA:   3'- -CGUGCCGgAGCUUCCU--------------GG-CC--------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 27010 0.67 0.818632
Target:  5'- aGgACGGCCcCGccGGGGCCGcGggGGa- -3'
miRNA:   3'- -CgUGCCGGaGCu-UCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 153981 0.67 0.818632
Target:  5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3'
miRNA:   3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 33179 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33152 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 38741 0.67 0.801381
Target:  5'- -gGCGGCuCUCucGGGGCgGGGGucGGUCg -3'
miRNA:   3'- cgUGCCG-GAGcuUCCUGgCCUU--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 96512 0.67 0.798741
Target:  5'- cCACGGCCaUCGGcgccuaccuggcgcGGGccGCCGGccuGGUCg -3'
miRNA:   3'- cGUGCCGG-AGCU--------------UCC--UGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 48955 0.67 0.843263
Target:  5'- cGCgGCGaGCCUCGAcGGGGCCGucGAGGcCc -3'
miRNA:   3'- -CG-UGC-CGGAGCU-UCCUGGCc-UUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 30177 0.67 0.846425
Target:  5'- cGCGCGGCgggCUCGGcgcgcgcgagggcguGGGGgaGGggGGUg -3'
miRNA:   3'- -CGUGCCG---GAGCU---------------UCCUggCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 138304 0.67 0.843263
Target:  5'- cGCgGCGGgCUCGGAGGguggcGCCGGcgcgGAGGa- -3'
miRNA:   3'- -CG-UGCCgGAGCUUCC-----UGGCC----UUCCag -5'
21573 5' -57.4 NC_004812.1 + 4862 0.67 0.843263
Target:  5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3'
miRNA:   3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 78733 0.68 0.774416
Target:  5'- gGCGCgaggagguccgGGCCgccgcCGAA-GACCGGGAGGUg -3'
miRNA:   3'- -CGUG-----------CCGGa----GCUUcCUGGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 69122 0.68 0.755811
Target:  5'- uCGCGGCCgaagaCGAcccGGCCGGcGAGGUCc -3'
miRNA:   3'- cGUGCCGGa----GCUuc-CUGGCC-UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 141783 0.68 0.76517
Target:  5'- -aACGGCCgcgCGggGGGgCGGGccgcgcggGGGUg -3'
miRNA:   3'- cgUGCCGGa--GCuuCCUgGCCU--------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 138393 0.68 0.755811
Target:  5'- -aGCGgcGCCUCGAcgcGGAguaCUGGggGGUCg -3'
miRNA:   3'- cgUGC--CGGAGCUu--CCU---GGCCuuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.