miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 128887 0.73 0.509167
Target:  5'- cGCAguaGGCCUCGAGGGcggcGgCGGAGGG-Cg -3'
miRNA:   3'- -CGUg--CCGGAGCUUCC----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 5628 0.72 0.528414
Target:  5'- -gGCGG-CUCGggGG-CCGGGcccgGGGUCg -3'
miRNA:   3'- cgUGCCgGAGCuuCCuGGCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 30942 0.72 0.518755
Target:  5'- cGCGCGGCC-CGAGGccucCCcGAGGGUCa -3'
miRNA:   3'- -CGUGCCGGaGCUUCcu--GGcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 153187 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 48486 0.72 0.528414
Target:  5'- cGCGCGGCCg-GggGcucGACCGGcguGGUCu -3'
miRNA:   3'- -CGUGCCGGagCuuC---CUGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 122286 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 5068 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91137 0.72 0.52551
Target:  5'- gGCGgGGCCggUCGGggacgggcgguccgGGGGCCGGggGGa- -3'
miRNA:   3'- -CGUgCCGG--AGCU--------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 11569 0.72 0.528414
Target:  5'- uCGCGGCgUCGcuGGGGcACCGGggGGg- -3'
miRNA:   3'- cGUGCCGgAGC--UUCC-UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 36529 0.72 0.528414
Target:  5'- -gGCGG-CUCGggGG-CCGGGcccgGGGUCg -3'
miRNA:   3'- cgUGCCgGAGCuuCCuGGCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 98540 0.72 0.538139
Target:  5'- uGCGCGGCCUCGGcgccGGGcGCCGGGGc--- -3'
miRNA:   3'- -CGUGCCGGAGCU----UCC-UGGCCUUccag -5'
21573 5' -57.4 NC_004812.1 + 4926 0.72 0.547925
Target:  5'- cGCuGCGGCCcgCGGAGGcggcGCUGGAGGG-Cg -3'
miRNA:   3'- -CG-UGCCGGa-GCUUCC----UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 77227 0.72 0.55678
Target:  5'- gGCGCGGCCgacgCGggGGugUGGGgcgcugcccucgcGGGg- -3'
miRNA:   3'- -CGUGCCGGa---GCuuCCugGCCU-------------UCCag -5'
21573 5' -57.4 NC_004812.1 + 35969 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 130434 0.72 0.547925
Target:  5'- cGCuGCGGCCcgCGGAGGcggcGCUGGAGGG-Cg -3'
miRNA:   3'- -CG-UGCCGGa-GCUUCC----UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 38901 0.71 0.587563
Target:  5'- cGCACGGCCUUGcccaucacGAGG-CCGuGAcgAGGUUg -3'
miRNA:   3'- -CGUGCCGGAGC--------UUCCuGGC-CU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 94620 0.71 0.627696
Target:  5'- cGCAcCGGCCgggCGuuGGGACCGGcgacGAGGg- -3'
miRNA:   3'- -CGU-GCCGGa--GCu-UCCUGGCC----UUCCag -5'
21573 5' -57.4 NC_004812.1 + 5956 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 8352 0.71 0.577591
Target:  5'- gGCGCGGCCgccccaccgcgUCGgcGGccGCCGGGgcccgGGGUCc -3'
miRNA:   3'- -CGUGCCGG-----------AGCuuCC--UGGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 116471 0.71 0.577591
Target:  5'- gGCGcCGGCCaccccggccccUCcgGAGGGGCCGG-GGGUCg -3'
miRNA:   3'- -CGU-GCCGG-----------AG--CUUCCUGGCCuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.