miRNA display CGI


Results 81 - 100 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 16922 0.71 0.607594
Target:  5'- cGCAUGGCCUgCG-AGGugCGGcAGGc- -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCugGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 26272 0.71 0.614625
Target:  5'- aCGCGGCCgCGcGGGugCcccgcggcgacaggGGAAGGUCg -3'
miRNA:   3'- cGUGCCGGaGCuUCCugG--------------CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91900 0.71 0.624678
Target:  5'- cCGCGGCCUCG-GGGAagUCGGccuccaggcgguccAGGGUCa -3'
miRNA:   3'- cGUGCCGGAGCuUCCU--GGCC--------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 71125 0.7 0.667876
Target:  5'- gGCGCGggcGCCUCGggGGuuCGGggGcgcgcgaguucGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCuuCCugGCCuuC-----------CAG- -5'
21573 5' -57.4 NC_004812.1 + 35535 0.7 0.677871
Target:  5'- aGCAUGGCgCgCGggGGGCgCGGgcGGg- -3'
miRNA:   3'- -CGUGCCG-GaGCuuCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 80598 0.7 0.637755
Target:  5'- cGCGgGGCC-CGGcugGGGGCUcgguGGggGGUCc -3'
miRNA:   3'- -CGUgCCGGaGCU---UCCUGG----CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 101237 0.7 0.687831
Target:  5'- cGCGcCGGCCUCGAcGGGCCGcagcgccGUCa -3'
miRNA:   3'- -CGU-GCCGGAGCUuCCUGGCcuuc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 83465 0.7 0.677871
Target:  5'- cCAUcGCCUCGAAGGcCCGcucGGGGUCg -3'
miRNA:   3'- cGUGcCGGAGCUUCCuGGCc--UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 111988 0.7 0.677871
Target:  5'- cCGCGGCCccccaagcgCGggGGGCUGGcGGGg- -3'
miRNA:   3'- cGUGCCGGa--------GCuuCCUGGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 55477 0.7 0.657853
Target:  5'- cGCACGcgcGCCgCGAAGccguucgacacGGCCGcGAAGGUCg -3'
miRNA:   3'- -CGUGC---CGGaGCUUC-----------CUGGC-CUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 100294 0.7 0.677871
Target:  5'- aGCACGGacgcgccgcCCUCcAGGGGCuCGGggGGg- -3'
miRNA:   3'- -CGUGCC---------GGAGcUUCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 122082 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36447 0.7 0.667876
Target:  5'- cCGCGGCCgCGuugucGAGGAgCGGggGGg- -3'
miRNA:   3'- cGUGCCGGaGC-----UUCCUgGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 35013 0.7 0.667876
Target:  5'- aGguCGGCgagCUCGGcgGGGGCCcGggGGUCg -3'
miRNA:   3'- -CguGCCG---GAGCU--UCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 32074 0.7 0.657853
Target:  5'- cGCGgGGCC-CGuGGGGCCcGGccccgGAGGUCg -3'
miRNA:   3'- -CGUgCCGGaGCuUCCUGG-CC-----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 24888 0.7 0.676874
Target:  5'- gGCGCaGGCUcacccccuccucgUCGAGGGugCGGugccuuccgaugAAGGUCa -3'
miRNA:   3'- -CGUG-CCGG-------------AGCUUCCugGCC------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 46477 0.7 0.657853
Target:  5'- -gACGGCCUCagGGAGGGCCccgagcacgaGGuuGGUCc -3'
miRNA:   3'- cgUGCCGGAG--CUUCCUGG----------CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5275 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 145206 0.7 0.64781
Target:  5'- aGCACGGCgUCGcGGuACCGGAAcgcGGUg -3'
miRNA:   3'- -CGUGCCGgAGCuUCcUGGCCUU---CCAg -5'
21573 5' -57.4 NC_004812.1 + 71760 0.7 0.668877
Target:  5'- gGUugGGCCggucgcugcgacaggCGggGGGgCGG-GGGUCg -3'
miRNA:   3'- -CGugCCGGa--------------GCuuCCUgGCCuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.