miRNA display CGI


Results 101 - 120 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 129317 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128735 0.7 0.637755
Target:  5'- cGCGCGGCggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga-GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 101237 0.7 0.687831
Target:  5'- cGCGcCGGCCUCGAcGGGCCGcagcgccGUCa -3'
miRNA:   3'- -CGU-GCCGGAGCUuCCUGGCcuuc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 80598 0.7 0.637755
Target:  5'- cGCGgGGCC-CGGcugGGGGCUcgguGGggGGUCc -3'
miRNA:   3'- -CGUgCCGGaGCU---UCCUGG----CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 86778 0.7 0.667876
Target:  5'- aCGCGGgCgCGAGGGcgACCGGggGGa- -3'
miRNA:   3'- cGUGCCgGaGCUUCC--UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 91090 0.7 0.687831
Target:  5'- cGCuuGGCCUCGGAcucgccGGccuGCCGGccguGGGGUCg -3'
miRNA:   3'- -CGugCCGGAGCUU------CC---UGGCC----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 3226 0.7 0.687831
Target:  5'- cGCGCGGCgggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga--GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 145794 0.7 0.687831
Target:  5'- aGCGCGagcGCCUCGGGcucGGugUGGGcggcgGGGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCUU---CCugGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 130846 0.7 0.687831
Target:  5'- -gACGGCCUCGAcgcucaagugGGGGCCccGggGGcCg -3'
miRNA:   3'- cgUGCCGGAGCU----------UCCUGGc-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 10378 0.7 0.677871
Target:  5'- aGUAC-GCCUCGggGGucuggGCCGGcGGGGUg -3'
miRNA:   3'- -CGUGcCGGAGCuuCC-----UGGCC-UUCCAg -5'
21573 5' -57.4 NC_004812.1 + 106736 0.7 0.687831
Target:  5'- gGCGgGGCCcaUCGuccGGGcGCgGGggGGUCg -3'
miRNA:   3'- -CGUgCCGG--AGCu--UCC-UGgCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 17004 0.7 0.667876
Target:  5'- gGCGCGgagucagaGCCUCGA---GCCGGggGGUg -3'
miRNA:   3'- -CGUGC--------CGGAGCUuccUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 36176 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 145987 0.7 0.65685
Target:  5'- uGCACGGCCgcaaaacCGggGGugCGGcucuaacgacgggGAGGa- -3'
miRNA:   3'- -CGUGCCGGa------GCuuCCugGCC-------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 152983 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 3809 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 137151 0.7 0.637755
Target:  5'- gGCGCGGUCgCGGacguauucgAGGugCGGGAGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCugGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 92106 0.7 0.634737
Target:  5'- aGCACGGCCUCcucgggcgugcucuGggGGAUgCGGGAGcGg- -3'
miRNA:   3'- -CGUGCCGGAG--------------CuuCCUG-GCCUUC-Cag -5'
21573 5' -57.4 NC_004812.1 + 77508 0.7 0.691802
Target:  5'- cGCGCGGCaCgccgcuaccccguuuUCGcGAGGAUCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCG-G---------------AGC-UUCCUGGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 104025 0.69 0.697745
Target:  5'- cGUACGGCCUCG--GGGCCGucgcGGcGUCg -3'
miRNA:   3'- -CGUGCCGGAGCuuCCUGGCcu--UC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.