Results 1 - 20 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21573 | 5' | -57.4 | NC_004812.1 | + | 13255 | 1.1 | 0.001935 |
Target: 5'- aGCACGGCCUCGAAGGACCGGAAGGUCc -3' miRNA: 3'- -CGUGCCGGAGCUUCCUGGCCUUCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 16856 | 0.81 | 0.183145 |
Target: 5'- cGCGCGGUCgCGggGGACCGcGAccuGGUCg -3' miRNA: 3'- -CGUGCCGGaGCuuCCUGGC-CUu--CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 55261 | 0.79 | 0.222569 |
Target: 5'- aGCGCGGUgUUGggGGGCUGGGccaggcuguGGGUCg -3' miRNA: 3'- -CGUGCCGgAGCuuCCUGGCCU---------UCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 72327 | 0.79 | 0.247195 |
Target: 5'- gGCGCGGCCgggCGGgccgcgggggggaggGGGGgCGGggGGUCu -3' miRNA: 3'- -CGUGCCGGa--GCU---------------UCCUgGCCuuCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 68216 | 0.78 | 0.256695 |
Target: 5'- cGCGCGGCCggcCGggGGugCGcGggGGcCg -3' miRNA: 3'- -CGUGCCGGa--GCuuCCugGC-CuuCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 17214 | 0.78 | 0.279159 |
Target: 5'- uCGCGGCCggugccgcuggagCGggGGACaCGGAGGGUg -3' miRNA: 3'- cGUGCCGGa------------GCuuCCUG-GCCUUCCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 135905 | 0.77 | 0.308705 |
Target: 5'- gGCGCGGCUcgcaGAGGGACCGGAAGc-- -3' miRNA: 3'- -CGUGCCGGag--CUUCCUGGCCUUCcag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 66626 | 0.77 | 0.308705 |
Target: 5'- uGCACGGCCUCGucGcGGCUGauGAGGUCg -3' miRNA: 3'- -CGUGCCGGAGCuuC-CUGGCc-UUCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 33934 | 0.76 | 0.330184 |
Target: 5'- uGCACcggcuccuGGCCUCGGggGGGGCCGGGGucgcGGUCc -3' miRNA: 3'- -CGUG--------CCGGAGCU--UCCUGGCCUU----CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 58270 | 0.76 | 0.330184 |
Target: 5'- cGCGCGGCCaUCac-GGGCCGGAggAGGUUg -3' miRNA: 3'- -CGUGCCGG-AGcuuCCUGGCCU--UCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 72038 | 0.76 | 0.345104 |
Target: 5'- -gACGGUCUgGggGGG-CGGggGGUCg -3' miRNA: 3'- cgUGCCGGAgCuuCCUgGCCuuCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 47781 | 0.76 | 0.345104 |
Target: 5'- uCGCGGCC-CGAGuGACCGGAGGG-Cg -3' miRNA: 3'- cGUGCCGGaGCUUcCUGGCCUUCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 107859 | 0.76 | 0.345104 |
Target: 5'- aGCA-GGCCcgCGAAGGAgCCGGggGGg- -3' miRNA: 3'- -CGUgCCGGa-GCUUCCU-GGCCuuCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 155137 | 0.75 | 0.376374 |
Target: 5'- cCGCGGCggCGggGGGCCGGGucgagggcGGUCg -3' miRNA: 3'- cGUGCCGgaGCuuCCUGGCCUu-------CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 155439 | 0.75 | 0.376374 |
Target: 5'- gGCgACGGCgaCGAGGGAgCGGggGGcCg -3' miRNA: 3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 124236 | 0.75 | 0.376374 |
Target: 5'- cCGCGGCggCGggGGGCCGGGucgagggcGGUCg -3' miRNA: 3'- cGUGCCGgaGCuuCCUGGCCUu-------CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 72080 | 0.75 | 0.39271 |
Target: 5'- aGCGCGGCCUgGAcgcccGGGAU-GGGAGGUUu -3' miRNA: 3'- -CGUGCCGGAgCU-----UCCUGgCCUUCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 105709 | 0.75 | 0.4095 |
Target: 5'- gGCGgGGCCggggcccCGAacaccGGGGCCGGggGGUg -3' miRNA: 3'- -CGUgCCGGa------GCU-----UCCUGGCCuuCCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 15731 | 0.75 | 0.4095 |
Target: 5'- -gACGGCgaUCGAGGGGCCGcGggGGcCg -3' miRNA: 3'- cgUGCCGg-AGCUUCCUGGC-CuuCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 121817 | 0.74 | 0.4172 |
Target: 5'- -gGCGGCCUCGGAGGcggagGCCGGGcgcuugcGGGcCg -3' miRNA: 3'- cgUGCCGGAGCUUCC-----UGGCCU-------UCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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