miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 121817 0.74 0.4172
Target:  5'- -gGCGGCCUCGGAGGcggagGCCGGGcgcuugcGGGcCg -3'
miRNA:   3'- cgUGCCGGAGCUUCC-----UGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 124333 0.74 0.426729
Target:  5'- uCACGGCCcCGggGGgggacgccgcggACCGGGAGGa- -3'
miRNA:   3'- cGUGCCGGaGCuuCC------------UGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 63162 0.74 0.435504
Target:  5'- cCGCGGCCUCcucGGGGACCGaggcgauguucuGggGGUCc -3'
miRNA:   3'- cGUGCCGGAGc--UUCCUGGC------------CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36575 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 38841 0.74 0.435504
Target:  5'- gGCGCGGCCg-GggGGcgcguCCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCu----GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 7940 0.74 0.435504
Target:  5'- gGCGCGGCCg-GggGGcgcguCCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCu----GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 5674 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 87054 0.74 0.444382
Target:  5'- gGCGCGGCCggcgccgCGGgcaGGGGCgCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGa------GCU---UCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 128830 0.74 0.453361
Target:  5'- cGCGCcaGGCCUCGggGaaGAgCGGguGGUCg -3'
miRNA:   3'- -CGUG--CCGGAGCuuC--CUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 135838 0.74 0.453361
Target:  5'- cGCugggacuCGGCgUCGggGGGCuCGGAGGG-Ca -3'
miRNA:   3'- -CGu------GCCGgAGCuuCCUG-GCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 3322 0.74 0.453361
Target:  5'- cGCGCcaGGCCUCGggGaaGAgCGGguGGUCg -3'
miRNA:   3'- -CGUG--CCGGAGCuuC--CUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 29360 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 154868 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 135359 0.73 0.48087
Target:  5'- cGCGCGcGCUUCu-GGGGCCacgGGGAGGUCc -3'
miRNA:   3'- -CGUGC-CGGAGcuUCCUGG---CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 87886 0.73 0.48087
Target:  5'- cCGCGGuCCUCG--GGGCCGGggGGc- -3'
miRNA:   3'- cGUGCC-GGAGCuuCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 39484 0.73 0.48087
Target:  5'- -gGCGGCgUUGAGGGugCGGc-GGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCugGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 30858 0.73 0.499653
Target:  5'- cGCcCGGCCaUGggGGGCCGaGggGG-Cg -3'
miRNA:   3'- -CGuGCCGGaGCuuCCUGGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 29931 0.73 0.509167
Target:  5'- gGCgACGGCg-CGAGGGAgCGGggGGcCg -3'
miRNA:   3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 128887 0.73 0.509167
Target:  5'- cGCAguaGGCCUCGAGGGcggcGgCGGAGGG-Cg -3'
miRNA:   3'- -CGUg--CCGGAGCUUCC----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 107302 0.73 0.509167
Target:  5'- gGCGgGGCCUUGggGcGuuCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGAGCuuC-Cu-GGCCuuCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.