miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 38901 0.71 0.587563
Target:  5'- cGCACGGCCUUGcccaucacGAGG-CCGuGAcgAGGUUg -3'
miRNA:   3'- -CGUGCCGGAGC--------UUCCuGGC-CU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44003 0.71 0.587563
Target:  5'- gGC-CGGCCUCcucGGAgCCGGggGcGUCg -3'
miRNA:   3'- -CGuGCCGGAGcuuCCU-GGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 36857 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 127604 0.71 0.587563
Target:  5'- uGCuggaaGGCCUCGGAGcGGuggagcgcCCGGAAGGUg -3'
miRNA:   3'- -CGug---CCGGAGCUUC-CU--------GGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 105852 0.71 0.597566
Target:  5'- --uCGGCCUCG-GGGACguCGGAcggcGGGUCg -3'
miRNA:   3'- cguGCCGGAGCuUCCUG--GCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 112606 0.71 0.597566
Target:  5'- cGCcccCGGCUcCGAGGaGGCCGGccGGUCg -3'
miRNA:   3'- -CGu--GCCGGaGCUUC-CUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 97401 0.71 0.597566
Target:  5'- cGCGCgGGCCUCGGGcGcGuACUGGuGGGUCg -3'
miRNA:   3'- -CGUG-CCGGAGCUU-C-C-UGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128929 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 69389 0.71 0.601575
Target:  5'- cGCAUccaGGCCUCGAAGGAaaCCGagcgggcccgaaugcGGAGGUg -3'
miRNA:   3'- -CGUG---CCGGAGCUUCCU--GGC---------------CUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 3421 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 4828 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 35729 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 16922 0.71 0.607594
Target:  5'- cGCAUGGCCUgCG-AGGugCGGcAGGc- -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCugGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 130637 0.71 0.607594
Target:  5'- cGCgACGGcCCUCGAGGaGGCgGGGAuGGUa -3'
miRNA:   3'- -CG-UGCC-GGAGCUUC-CUGgCCUU-CCAg -5'
21573 5' -57.4 NC_004812.1 + 59566 0.71 0.607594
Target:  5'- cGCugGGCCUCGcGGGuCgGGgcGGa- -3'
miRNA:   3'- -CGugCCGGAGCuUCCuGgCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 26272 0.71 0.614625
Target:  5'- aCGCGGCCgCGcGGGugCcccgcggcgacaggGGAAGGUCg -3'
miRNA:   3'- cGUGCCGGaGCuUCCugG--------------CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44989 0.71 0.61764
Target:  5'- cCGCGGCCaCGAgccAGGuGCCGGAGGcGUUg -3'
miRNA:   3'- cGUGCCGGaGCU---UCC-UGGCCUUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 91900 0.71 0.624678
Target:  5'- cCGCGGCCUCG-GGGAagUCGGccuccaggcgguccAGGGUCa -3'
miRNA:   3'- cGUGCCGGAGCuUCCU--GGCC--------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 26327 0.71 0.627696
Target:  5'- uCGCGGCCgcUCGggGGuCCcGggGGUg -3'
miRNA:   3'- cGUGCCGG--AGCuuCCuGGcCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 94620 0.71 0.627696
Target:  5'- cGCAcCGGCCgggCGuuGGGACCGGcgacGAGGg- -3'
miRNA:   3'- -CGU-GCCGGa--GCu-UCCUGGCC----UUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.