miRNA display CGI


Results 81 - 100 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 26327 0.71 0.627696
Target:  5'- uCGCGGCCgcUCGggGGuCCcGggGGUg -3'
miRNA:   3'- cGUGCCGG--AGCuuCCuGGcCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 94620 0.71 0.627696
Target:  5'- cGCAcCGGCCgggCGuuGGGACCGGcgacGAGGg- -3'
miRNA:   3'- -CGU-GCCGGa--GCu-UCCUGGCC----UUCCag -5'
21573 5' -57.4 NC_004812.1 + 94342 0.71 0.627696
Target:  5'- gGCGCGGCCUgCGcGGGGCgGGcGGcGUUg -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCUGgCCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 92106 0.7 0.634737
Target:  5'- aGCACGGCCUCcucgggcgugcucuGggGGAUgCGGGAGcGg- -3'
miRNA:   3'- -CGUGCCGGAG--------------CuuCCUG-GCCUUC-Cag -5'
21573 5' -57.4 NC_004812.1 + 128735 0.7 0.637755
Target:  5'- cGCGCGGCggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga-GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 80598 0.7 0.637755
Target:  5'- cGCGgGGCC-CGGcugGGGGCUcgguGGggGGUCc -3'
miRNA:   3'- -CGUgCCGGaGCU---UCCUGG----CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 137151 0.7 0.637755
Target:  5'- gGCGCGGUCgCGGacguauucgAGGugCGGGAGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCugGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 3809 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 129317 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 152983 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 145206 0.7 0.64781
Target:  5'- aGCACGGCgUCGcGGuACCGGAAcgcGGUg -3'
miRNA:   3'- -CGUGCCGgAGCuUCcUGGCCUU---CCAg -5'
21573 5' -57.4 NC_004812.1 + 122082 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 135588 0.7 0.64781
Target:  5'- uGCGCGGCCUCaacGGcCCGGuGGGg- -3'
miRNA:   3'- -CGUGCCGGAGcuuCCuGGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 145987 0.7 0.65685
Target:  5'- uGCACGGCCgcaaaacCGggGGugCGGcucuaacgacgggGAGGa- -3'
miRNA:   3'- -CGUGCCGGa------GCuuCCugGCC-------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 5275 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 32074 0.7 0.657853
Target:  5'- cGCGgGGCC-CGuGGGGCCcGGccccgGAGGUCg -3'
miRNA:   3'- -CGUgCCGGaGCuUCCUGG-CC-----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36176 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 55477 0.7 0.657853
Target:  5'- cGCACGcgcGCCgCGAAGccguucgacacGGCCGcGAAGGUCg -3'
miRNA:   3'- -CGUGC---CGGaGCUUC-----------CUGGC-CUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 46477 0.7 0.657853
Target:  5'- -gACGGCCUCagGGAGGGCCccgagcacgaGGuuGGUCc -3'
miRNA:   3'- cgUGCCGGAG--CUUCCUGG----------CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 71125 0.7 0.667876
Target:  5'- gGCGCGggcGCCUCGggGGuuCGGggGcgcgcgaguucGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCuuCCugGCCuuC-----------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.