miRNA display CGI


Results 101 - 120 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 71125 0.7 0.667876
Target:  5'- gGCGCGggcGCCUCGggGGuuCGGggGcgcgcgaguucGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCuuCCugGCCuuC-----------CAG- -5'
21573 5' -57.4 NC_004812.1 + 35013 0.7 0.667876
Target:  5'- aGguCGGCgagCUCGGcgGGGGCCcGggGGUCg -3'
miRNA:   3'- -CguGCCG---GAGCU--UCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 86778 0.7 0.667876
Target:  5'- aCGCGGgCgCGAGGGcgACCGGggGGa- -3'
miRNA:   3'- cGUGCCgGaGCUUCC--UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 17004 0.7 0.667876
Target:  5'- gGCGCGgagucagaGCCUCGA---GCCGGggGGUg -3'
miRNA:   3'- -CGUGC--------CGGAGCUuccUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 71760 0.7 0.668877
Target:  5'- gGUugGGCCggucgcugcgacaggCGggGGGgCGG-GGGUCg -3'
miRNA:   3'- -CGugCCGGa--------------GCuuCCUgGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 24888 0.7 0.676874
Target:  5'- gGCGCaGGCUcacccccuccucgUCGAGGGugCGGugccuuccgaugAAGGUCa -3'
miRNA:   3'- -CGUG-CCGG-------------AGCUUCCugGCC------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 100294 0.7 0.677871
Target:  5'- aGCACGGacgcgccgcCCUCcAGGGGCuCGGggGGg- -3'
miRNA:   3'- -CGUGCC---------GGAGcUUCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 35535 0.7 0.677871
Target:  5'- aGCAUGGCgCgCGggGGGCgCGGgcGGg- -3'
miRNA:   3'- -CGUGCCG-GaGCuuCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 83465 0.7 0.677871
Target:  5'- cCAUcGCCUCGAAGGcCCGcucGGGGUCg -3'
miRNA:   3'- cGUGcCGGAGCUUCCuGGCc--UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 111988 0.7 0.677871
Target:  5'- cCGCGGCCccccaagcgCGggGGGCUGGcGGGg- -3'
miRNA:   3'- cGUGCCGGa--------GCuuCCUGGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 10378 0.7 0.677871
Target:  5'- aGUAC-GCCUCGggGGucuggGCCGGcGGGGUg -3'
miRNA:   3'- -CGUGcCGGAGCuuCC-----UGGCC-UUCCAg -5'
21573 5' -57.4 NC_004812.1 + 130846 0.7 0.687831
Target:  5'- -gACGGCCUCGAcgcucaagugGGGGCCccGggGGcCg -3'
miRNA:   3'- cgUGCCGGAGCU----------UCCUGGc-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 3226 0.7 0.687831
Target:  5'- cGCGCGGCgggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga--GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 145794 0.7 0.687831
Target:  5'- aGCGCGagcGCCUCGGGcucGGugUGGGcggcgGGGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCUU---CCugGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 106736 0.7 0.687831
Target:  5'- gGCGgGGCCcaUCGuccGGGcGCgGGggGGUCg -3'
miRNA:   3'- -CGUgCCGG--AGCu--UCC-UGgCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91090 0.7 0.687831
Target:  5'- cGCuuGGCCUCGGAcucgccGGccuGCCGGccguGGGGUCg -3'
miRNA:   3'- -CGugCCGGAGCUU------CC---UGGCC----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 101237 0.7 0.687831
Target:  5'- cGCGcCGGCCUCGAcGGGCCGcagcgccGUCa -3'
miRNA:   3'- -CGU-GCCGGAGCUuCCUGGCcuuc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 71689 0.7 0.691802
Target:  5'- -gGCGGCCcgggggggcgugcugUCGGgccAGGGCCGGGAaGUCg -3'
miRNA:   3'- cgUGCCGG---------------AGCU---UCCUGGCCUUcCAG- -5'
21573 5' -57.4 NC_004812.1 + 77508 0.7 0.691802
Target:  5'- cGCGCGGCaCgccgcuaccccguuuUCGcGAGGAUCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCG-G---------------AGC-UUCCUGGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 68130 0.69 0.694775
Target:  5'- cCGCGGCgaCGAAGGGCCcggugucggGGAguggcuccccggcaGGGUCg -3'
miRNA:   3'- cGUGCCGgaGCUUCCUGG---------CCU--------------UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.