miRNA display CGI


Results 121 - 140 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 25895 0.69 0.697745
Target:  5'- gGCuCGGCCUCGGagucGGGGUCGGAgucGGaGUCg -3'
miRNA:   3'- -CGuGCCGGAGCU----UCCUGGCCU---UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 47184 0.69 0.697745
Target:  5'- gGCG-GGCCUCGggGGcccGCCGGGccacccguGGGg- -3'
miRNA:   3'- -CGUgCCGGAGCuuCC---UGGCCU--------UCCag -5'
21573 5' -57.4 NC_004812.1 + 22314 0.69 0.697745
Target:  5'- -gGgGGCCUCGGcgccGGGGCUGGAccuGGUUc -3'
miRNA:   3'- cgUgCCGGAGCU----UCCUGGCCUu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 104025 0.69 0.697745
Target:  5'- cGUACGGCCUCG--GGGCCGucgcGGcGUCg -3'
miRNA:   3'- -CGUGCCGGAGCuuCCUGGCcu--UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 73939 0.69 0.697745
Target:  5'- cGCACGaagcGCC-CGAAGaGCCGGAAGccGUCg -3'
miRNA:   3'- -CGUGC----CGGaGCUUCcUGGCCUUC--CAG- -5'
21573 5' -57.4 NC_004812.1 + 13695 0.69 0.697745
Target:  5'- cGCG-GGCCcgcagGAGGGGCUGGcGGGUCg -3'
miRNA:   3'- -CGUgCCGGag---CUUCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 151403 0.69 0.697745
Target:  5'- gGCuCGGCCUCGGagucGGGGUCGGAgucGGaGUCg -3'
miRNA:   3'- -CGuGCCGGAGCU----UCCUGGCCU---UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 110988 0.69 0.700709
Target:  5'- aGCGCGGCCguccccgcgcccaUGAGGGcGCUGGAgcgggagcacuacuGGGUCg -3'
miRNA:   3'- -CGUGCCGGa------------GCUUCC-UGGCCU--------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 73167 0.69 0.707606
Target:  5'- cGCGCuGGCC-CG-AGGGCCGGuacAGGg- -3'
miRNA:   3'- -CGUG-CCGGaGCuUCCUGGCCu--UCCag -5'
21573 5' -57.4 NC_004812.1 + 72311 0.69 0.707606
Target:  5'- aCGCGGCC-CGAGGucCCGcGAAGGg- -3'
miRNA:   3'- cGUGCCGGaGCUUCcuGGC-CUUCCag -5'
21573 5' -57.4 NC_004812.1 + 39850 0.69 0.707606
Target:  5'- -gGCGGUg-CGggGGGCCGGggGcUCc -3'
miRNA:   3'- cgUGCCGgaGCuuCCUGGCCuuCcAG- -5'
21573 5' -57.4 NC_004812.1 + 5702 0.69 0.707606
Target:  5'- cCAgGGCCaCGggGGGgCGG-GGGUCu -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 59506 0.69 0.707606
Target:  5'- gGCGCGGCCccCGgcGGACaggGGgcGGUa -3'
miRNA:   3'- -CGUGCCGGa-GCuuCCUGg--CCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 36603 0.69 0.707606
Target:  5'- cCAgGGCCaCGggGGGgCGG-GGGUCu -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 100650 0.69 0.707606
Target:  5'- gGCGCGaGCCgCGccGGGCCGGGccucGGcGUCg -3'
miRNA:   3'- -CGUGC-CGGaGCuuCCUGGCCU----UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 13020 0.69 0.716428
Target:  5'- -gGCGGCCugaucgccgggggUCGcGGGGCCGGccccGGUCg -3'
miRNA:   3'- cgUGCCGG-------------AGCuUCCUGGCCuu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 31240 0.69 0.717405
Target:  5'- uGCccguCGGCgUCGGcaaAGcGcGCCGGGAGGUCg -3'
miRNA:   3'- -CGu---GCCGgAGCU---UC-C-UGGCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 61122 0.69 0.717405
Target:  5'- cGCGCGGgCguaGAcguaccccagGGGGCUGGggGGUa -3'
miRNA:   3'- -CGUGCCgGag-CU----------UCCUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 126932 0.69 0.726165
Target:  5'- -gGCGGCCgcgggGAGGGGCCGGGgccgcgaGGGcCg -3'
miRNA:   3'- cgUGCCGGag---CUUCCUGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 93509 0.69 0.726165
Target:  5'- -aGCGGCCgggagaGAAGGagaaggaggagcgGCCGGAGGGg- -3'
miRNA:   3'- cgUGCCGGag----CUUCC-------------UGGCCUUCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.