miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 14922 0.66 0.878439
Target:  5'- cCGCGGUCUCGAAGGcgggcgcgugcaugACgaGGcccAGGUCg -3'
miRNA:   3'- cGUGCCGGAGCUUCC--------------UGg-CCu--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 39110 0.66 0.878439
Target:  5'- -aGCGGCCgggggcccgcgUCGGAcgcgcccggcggccGGGCCGG-GGGUCc -3'
miRNA:   3'- cgUGCCGG-----------AGCUU--------------CCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 45577 0.66 0.876328
Target:  5'- cGCACaGGCCguuccucgcgcccaCGcucAGGGCCaGGAAGGUUc -3'
miRNA:   3'- -CGUG-CCGGa-------------GCu--UCCUGG-CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 115247 0.66 0.873484
Target:  5'- uGCACcaacgaGGCCUCGGuucGGGACUcGAGGccGUCg -3'
miRNA:   3'- -CGUG------CCGGAGCU---UCCUGGcCUUC--CAG- -5'
21573 5' -57.4 NC_004812.1 + 79613 0.66 0.873484
Target:  5'- aGCACGGCCgcggUGAGGGcgGCCGu--GGcCg -3'
miRNA:   3'- -CGUGCCGGa---GCUUCC--UGGCcuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 68427 0.66 0.873484
Target:  5'- cCGCGGCCgagaGGAGGGacgccCCGG--GGUCg -3'
miRNA:   3'- cGUGCCGGag--CUUCCU-----GGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 146791 0.66 0.873484
Target:  5'- -aACGGCCgaacacagUCGAAGGGggGGAGGGa- -3'
miRNA:   3'- cgUGCCGG--------AGCUUCCUggCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 92212 0.66 0.873484
Target:  5'- cGCccuCaGCCUCGccucGGGGCCGGGagaGGGUg -3'
miRNA:   3'- -CGu--GcCGGAGCu---UCCUGGCCU---UCCAg -5'
21573 5' -57.4 NC_004812.1 + 148984 0.66 0.873484
Target:  5'- cGCGCGGC---GAGGGAa-GGAGGGUg -3'
miRNA:   3'- -CGUGCCGgagCUUCCUggCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 153115 0.66 0.873484
Target:  5'- gGCGCcGCCcCGggGGcggGCgCGGggGGcUCg -3'
miRNA:   3'- -CGUGcCGGaGCuuCC---UG-GCCuuCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 122214 0.66 0.873484
Target:  5'- gGCGCcGCCcCGggGGcggGCgCGGggGGcUCg -3'
miRNA:   3'- -CGUGcCGGaGCuuCC---UG-GCCuuCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 68170 0.66 0.873484
Target:  5'- gGCGgucgUGGCCcCGgcGGcACUGGggGGUg -3'
miRNA:   3'- -CGU----GCCGGaGCuuCC-UGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 23476 0.66 0.873484
Target:  5'- cGCGCGGC---GAGGGAa-GGAGGGUg -3'
miRNA:   3'- -CGUGCCGgagCUUCCUggCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 83551 0.66 0.873484
Target:  5'- aGCGCGGUCUCcgGGAGG-CCGuGcgccccgugcAGGUCg -3'
miRNA:   3'- -CGUGCCGGAG--CUUCCuGGCcU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 64352 0.66 0.869156
Target:  5'- gGCG-GGCCUgGAGccGGACCGGGacuaccucgccaucgAGGUg -3'
miRNA:   3'- -CGUgCCGGAgCUU--CCUGGCCU---------------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 154956 0.66 0.866228
Target:  5'- cCGCGGCCaaCGggGGAgCGGcgcGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUgGCCuucCAG- -5'
21573 5' -57.4 NC_004812.1 + 70902 0.66 0.866228
Target:  5'- gGCGgGGaUCUCGcgcgGGGGGgCGGGAGGUg -3'
miRNA:   3'- -CGUgCC-GGAGC----UUCCUgGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 62477 0.66 0.866228
Target:  5'- cGCGCGcGCCUCu--GGGCCGGcgcGGa- -3'
miRNA:   3'- -CGUGC-CGGAGcuuCCUGGCCuu-CCag -5'
21573 5' -57.4 NC_004812.1 + 54604 0.66 0.866228
Target:  5'- gGCGUGGCCgCGGggacgggcGGGGCCGGAgAGGcCc -3'
miRNA:   3'- -CGUGCCGGaGCU--------UCCUGGCCU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 124055 0.66 0.866228
Target:  5'- cCGCGGCCaaCGggGGAgCGGcgcGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUgGCCuucCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.