miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 35094 0.66 0.865492
Target:  5'- cGCGCGaGCgaCGAGGGcagcgucACCGGGaaccgcagcgucAGGUCc -3'
miRNA:   3'- -CGUGC-CGgaGCUUCC-------UGGCCU------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 6290 0.66 0.861777
Target:  5'- gGCACGGCCa-GggGGAgCGGcgcccccgggcacgcGGGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCUgGCC---------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 37191 0.66 0.861777
Target:  5'- gGCACGGCCa-GggGGAgCGGcgcccccgggcacgcGGGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCUgGCC---------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 121015 0.66 0.858769
Target:  5'- cGCAC-GCCUCGgcGGucGCCGucGGGUg -3'
miRNA:   3'- -CGUGcCGGAGCuuCC--UGGCcuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 134647 0.66 0.858769
Target:  5'- gGCugGGCC-CGGAGGuCCugcaGGAGG-Cg -3'
miRNA:   3'- -CGugCCGGaGCUUCCuGGc---CUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 59642 0.66 0.858769
Target:  5'- -aGCGGCCgCGggGGAUgagaCGGAcGGGcCg -3'
miRNA:   3'- cgUGCCGGaGCuuCCUG----GCCU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 44764 0.66 0.858769
Target:  5'- -gGCGGCC-CGAugAGGGC--GAGGGUCu -3'
miRNA:   3'- cgUGCCGGaGCU--UCCUGgcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 15223 0.66 0.858769
Target:  5'- aGCACGGCgUaguacacggCGAcgGGGACgCuGggGGUCu -3'
miRNA:   3'- -CGUGCCGgA---------GCU--UCCUG-GcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 58401 0.66 0.858769
Target:  5'- -gGCGGCCgccgccUGGAGG-CUGGggGGg- -3'
miRNA:   3'- cgUGCCGGa-----GCUUCCuGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 137959 0.66 0.858769
Target:  5'- gGCGCGGCggcccCUCGucGGGgCGG--GGUCg -3'
miRNA:   3'- -CGUGCCG-----GAGCuuCCUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 74767 0.66 0.858769
Target:  5'- cGCGCGGCCcCGAGGGccuCCGGc----- -3'
miRNA:   3'- -CGUGCCGGaGCUUCCu--GGCCuuccag -5'
21573 5' -57.4 NC_004812.1 + 16305 0.66 0.858012
Target:  5'- cGCAUGGCggaCGAgcGGGGgCGGAgaccgauGGGUCg -3'
miRNA:   3'- -CGUGCCGga-GCU--UCCUgGCCU-------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91592 0.66 0.857253
Target:  5'- uGCugGGUCgcgcgucggaaaUGggGGACCcGGggGGg- -3'
miRNA:   3'- -CGugCCGGa-----------GCuuCCUGG-CCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 104049 0.66 0.856493
Target:  5'- -gAgGGCCUCG-GGGACgugggccgcgcgguCGGcAAGGUCg -3'
miRNA:   3'- cgUgCCGGAGCuUCCUG--------------GCC-UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 12375 0.66 0.851112
Target:  5'- cGCcCGGCCgCGc--GGCCGGGAGGg- -3'
miRNA:   3'- -CGuGCCGGaGCuucCUGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 96683 0.66 0.851112
Target:  5'- cCACcGCgCUCGAGuGGGCCGGcaucgccgcGGGGUCc -3'
miRNA:   3'- cGUGcCG-GAGCUU-CCUGGCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 71848 0.66 0.851112
Target:  5'- gGCGucucCGGCC-CGggGGAU--GggGGUCg -3'
miRNA:   3'- -CGU----GCCGGaGCuuCCUGgcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 123576 0.66 0.851112
Target:  5'- gGCGCGGCCgggcUCGAGucguccgucgucGGGCgGGcgggcggcgGAGGUCc -3'
miRNA:   3'- -CGUGCCGG----AGCUU------------CCUGgCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 154477 0.66 0.851112
Target:  5'- gGCGCGGCCgggcUCGAGucguccgucgucGGGCgGGcgggcggcgGAGGUCc -3'
miRNA:   3'- -CGUGCCGG----AGCUU------------CCUGgCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 13539 0.66 0.851112
Target:  5'- cGCACGGCC-CGucGGucucucucucACCGaGggGGg- -3'
miRNA:   3'- -CGUGCCGGaGCuuCC----------UGGC-CuuCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.