miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 13539 0.66 0.851112
Target:  5'- cGCACGGCC-CGucGGucucucucucACCGaGggGGg- -3'
miRNA:   3'- -CGUGCCGGaGCuuCC----------UGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 54676 0.66 0.850336
Target:  5'- -aGCGGCCgggUCGcggcgaggagggcGAGGGCCaGGAGGGg- -3'
miRNA:   3'- cgUGCCGG---AGC-------------UUCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 30177 0.67 0.846425
Target:  5'- cGCGCGGCgggCUCGGcgcgcgcgagggcguGGGGgaGGggGGUg -3'
miRNA:   3'- -CGUGCCG---GAGCU---------------UCCUggCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 98007 0.67 0.846425
Target:  5'- gGCuCGGgCUCG-AGGuCCGGGuccgguuccgguuccGGGUCg -3'
miRNA:   3'- -CGuGCCgGAGCuUCCuGGCCU---------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 54521 0.67 0.843263
Target:  5'- gGC-CGGCCUCGAcGGACgCGuu-GGUg -3'
miRNA:   3'- -CGuGCCGGAGCUuCCUG-GCcuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 40956 0.67 0.843263
Target:  5'- gGUGCuGGCCUaCGAGGGAUcucgccacugCGGccGGUCu -3'
miRNA:   3'- -CGUG-CCGGA-GCUUCCUG----------GCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 4862 0.67 0.843263
Target:  5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3'
miRNA:   3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 130370 0.67 0.843263
Target:  5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3'
miRNA:   3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 75933 0.67 0.843263
Target:  5'- cCAgGGaCCU-GGAGGugCGGGAGGa- -3'
miRNA:   3'- cGUgCC-GGAgCUUCCugGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 29006 0.67 0.843263
Target:  5'- aGCGCGGCC-CGGgccgccccgAGGACugguagacgCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCUG---------GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 48955 0.67 0.843263
Target:  5'- cGCgGCGaGCCUCGAcGGGGCCGucGAGGcCc -3'
miRNA:   3'- -CG-UGC-CGGAGCU-UCCUGGCc-UUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 138304 0.67 0.843263
Target:  5'- cGCgGCGGgCUCGGAGGguggcGCCGGcgcgGAGGa- -3'
miRNA:   3'- -CG-UGCCgGAGCUUCC-----UGGCC----UUCCag -5'
21573 5' -57.4 NC_004812.1 + 152785 0.67 0.843263
Target:  5'- gGCGgGGCCUggggCGggGccgcaGGCCGGGcgcgggccugAGGUCg -3'
miRNA:   3'- -CGUgCCGGA----GCuuC-----CUGGCCU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 121884 0.67 0.843263
Target:  5'- gGCGgGGCCUggggCGggGccgcaGGCCGGGcgcgggccugAGGUCg -3'
miRNA:   3'- -CGUgCCGGA----GCuuC-----CUGGCCU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 154035 0.67 0.843263
Target:  5'- -gGCGGCgUCGGAGG-CgGGGucGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCuGgCCUucCAG- -5'
21573 5' -57.4 NC_004812.1 + 54209 0.67 0.843263
Target:  5'- uCACcuCCUCGAAGGGCaCGGGGgcgcGGUCc -3'
miRNA:   3'- cGUGccGGAGCUUCCUG-GCCUU----CCAG- -5'
21573 5' -57.4 NC_004812.1 + 123134 0.67 0.843263
Target:  5'- -gGCGGCgUCGGAGG-CgGGGucGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCuGgCCUucCAG- -5'
21573 5' -57.4 NC_004812.1 + 154515 0.67 0.843263
Target:  5'- aGCGCGGCC-CGGgccgccccgAGGACugguagacgCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCUG---------GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 130725 0.67 0.843263
Target:  5'- gGCGCGGgCgccgCGGAGGGCCGGccGc-- -3'
miRNA:   3'- -CGUGCCgGa---GCUUCCUGGCCuuCcag -5'
21573 5' -57.4 NC_004812.1 + 45252 0.67 0.835229
Target:  5'- aGCugGGCgaCGAgcuggGGGGcCCGcGGGGUCg -3'
miRNA:   3'- -CGugCCGgaGCU-----UCCU-GGCcUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.