miRNA display CGI


Results 81 - 100 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 119571 0.67 0.835229
Target:  5'- uCAUGGCCUCccagcaccuGGACCaGAcGGUCg -3'
miRNA:   3'- cGUGCCGGAGcuu------CCUGGcCUuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 155560 0.67 0.835229
Target:  5'- cCGCGGCCgggcaGGAGGAgaCCGcGGGGUUg -3'
miRNA:   3'- cGUGCCGGag---CUUCCU--GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 115728 0.67 0.835229
Target:  5'- cGC-CGGCCgggcguauaUGAAuGGCCGGAggaGGGUCg -3'
miRNA:   3'- -CGuGCCGGa--------GCUUcCUGGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 13475 0.67 0.835229
Target:  5'- cCACGGUCagCGc-GGGCUGGuGGGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 52042 0.67 0.835229
Target:  5'- cGCACGGCCguggCGAacacgcGGGcaucggccACCGG-GGGUg -3'
miRNA:   3'- -CGUGCCGGa---GCU------UCC--------UGGCCuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 124659 0.67 0.835229
Target:  5'- cCGCGGCCgggcaGGAGGAgaCCGcGGGGUUg -3'
miRNA:   3'- cGUGCCGGag---CUUCCU--GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 45252 0.67 0.835229
Target:  5'- aGCugGGCgaCGAgcuggGGGGcCCGcGGGGUCg -3'
miRNA:   3'- -CGugCCGgaGCU-----UCCU-GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 138799 0.67 0.834415
Target:  5'- --gUGGCCgCGAAcccccucuuugacGGGCCGGAGGGa- -3'
miRNA:   3'- cguGCCGGaGCUU-------------CCUGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 9839 0.67 0.827845
Target:  5'- cGUugGGCCUCGAcgacgcucacgccgAccguccgcccgccuuGGACUGGAcgGGGUUu -3'
miRNA:   3'- -CGugCCGGAGCU--------------U---------------CCUGGCCU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36372 0.67 0.827016
Target:  5'- cCAgGGCCaCGggGGGgCG-AGGGUCa -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 13403 0.67 0.827016
Target:  5'- gGCGCGGC---GggGGugacgGCCGGAGGGg- -3'
miRNA:   3'- -CGUGCCGgagCuuCC-----UGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 60008 0.67 0.827016
Target:  5'- aGCACGGggaCCgUCGggGGguagccgaccaGCCGGcAGGUg -3'
miRNA:   3'- -CGUGCC---GG-AGCuuCC-----------UGGCCuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 155298 0.67 0.827016
Target:  5'- gGCGCGGC-----GGGGCCcGggGGUCg -3'
miRNA:   3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 142664 0.67 0.827016
Target:  5'- -aACGGCUccuUCcuGGAGGACCuGGAGGUUc -3'
miRNA:   3'- cgUGCCGG---AG--CUUCCUGGcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 154481 0.67 0.827016
Target:  5'- cGCGgGGCCUCcccgGAcuGGGACUGGGacuGGGa- -3'
miRNA:   3'- -CGUgCCGGAG----CU--UCCUGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 28972 0.67 0.827016
Target:  5'- cGCGgGGCCUCcccgGAcuGGGACUGGGacuGGGa- -3'
miRNA:   3'- -CGUgCCGGAG----CU--UCCUGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 29790 0.67 0.827016
Target:  5'- gGCGCGGC-----GGGGCCcGggGGUCg -3'
miRNA:   3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5471 0.67 0.827016
Target:  5'- cCAgGGCCaCGggGGGgCG-AGGGUCa -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 19890 0.67 0.827016
Target:  5'- gGCGCGGCggCGggGGACgCGGc-GGcCc -3'
miRNA:   3'- -CGUGCCGgaGCuuCCUG-GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 130472 0.67 0.823683
Target:  5'- cGgGCGGCCggcggcggcgaggCGggGGGCgaCGGGuccGGGUCc -3'
miRNA:   3'- -CgUGCCGGa------------GCuuCCUG--GCCU---UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.