miRNA display CGI


Results 101 - 120 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 127519 0.67 0.822006
Target:  5'- cGCGgGGCCggCGuccucggcgaggcucGAGGcCCGGAAGGa- -3'
miRNA:   3'- -CGUgCCGGa-GC---------------UUCCuGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 145819 0.67 0.818632
Target:  5'- cGUGCGGCCccgccggagCGAAGG-CCGGGcccGGGg- -3'
miRNA:   3'- -CGUGCCGGa--------GCUUCCuGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 98778 0.67 0.818632
Target:  5'- aGCGaGGCCUCGuaguGGGGCgaCGGAccccGGUCc -3'
miRNA:   3'- -CGUgCCGGAGCu---UCCUG--GCCUu---CCAG- -5'
21573 5' -57.4 NC_004812.1 + 103957 0.67 0.818632
Target:  5'- -gAgGGCCgccgGggGGACCGGAacGGGg- -3'
miRNA:   3'- cgUgCCGGag--CuuCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 121962 0.67 0.818632
Target:  5'- gGCugGGCCUgagCGgcGGGCCuGGGcuGGGcCu -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUGG-CCU--UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 123080 0.67 0.818632
Target:  5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3'
miRNA:   3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 152519 0.67 0.818632
Target:  5'- aGgACGGCCcCGccGGGGCCGcGggGGa- -3'
miRNA:   3'- -CgUGCCGGaGCu-UCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 153981 0.67 0.818632
Target:  5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3'
miRNA:   3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 27010 0.67 0.818632
Target:  5'- aGgACGGCCcCGccGGGGCCGcGggGGa- -3'
miRNA:   3'- -CgUGCCGGaGCu-UCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 94412 0.67 0.818632
Target:  5'- cGCGCGGCC--GggGGGCCGaaucGGUg -3'
miRNA:   3'- -CGUGCCGGagCuuCCUGGCcuu-CCAg -5'
21573 5' -57.4 NC_004812.1 + 152863 0.67 0.818632
Target:  5'- gGCugGGCCUgagCGgcGGGCCuGGGcuGGGcCu -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUGG-CCU--UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 19291 0.67 0.816085
Target:  5'- uGCGCGGUgUCGAGGGGgcgaacgcgggcccCCaGGuacguguaGAGGUCg -3'
miRNA:   3'- -CGUGCCGgAGCUUCCU--------------GG-CC--------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91193 0.67 0.810085
Target:  5'- aCGCGGgCUCGggGG--CGGggGG-Cg -3'
miRNA:   3'- cGUGCCgGAGCuuCCugGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 26094 0.67 0.810085
Target:  5'- gGCcuCGGaCUCGGAGGACuCGGAGGa-- -3'
miRNA:   3'- -CGu-GCCgGAGCUUCCUG-GCCUUCcag -5'
21573 5' -57.4 NC_004812.1 + 30737 0.67 0.810085
Target:  5'- aGCGgGGCgggaGggGGACgGGAGGGg- -3'
miRNA:   3'- -CGUgCCGgag-CuuCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 130897 0.67 0.810085
Target:  5'- uCGCGGCg-CG--GGGCCGGggGcGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 129724 0.67 0.810085
Target:  5'- cCGCGGCggCGucGGGCCGGggGcGg- -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-Cag -5'
21573 5' -57.4 NC_004812.1 + 68248 0.67 0.810085
Target:  5'- gGCcuCGGCCUCGAcguccucguccAGGGCCccGGAGGcCg -3'
miRNA:   3'- -CGu-GCCGGAGCU-----------UCCUGGc-CUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 156245 0.67 0.810085
Target:  5'- aGCGgGGCgggaGggGGACgGGAGGGg- -3'
miRNA:   3'- -CGUgCCGgag-CuuCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 26231 0.67 0.810085
Target:  5'- -gGCGGgaCUCGAGGGGCCGGucuccgaccGGGa- -3'
miRNA:   3'- cgUGCCg-GAGCUUCCUGGCCu--------UCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.