miRNA display CGI


Results 121 - 140 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 68248 0.67 0.810085
Target:  5'- gGCcuCGGCCUCGAcguccucguccAGGGCCccGGAGGcCg -3'
miRNA:   3'- -CGu-GCCGGAGCU-----------UCCUGGc-CUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 129724 0.67 0.810085
Target:  5'- cCGCGGCggCGucGGGCCGGggGcGg- -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-Cag -5'
21573 5' -57.4 NC_004812.1 + 130897 0.67 0.810085
Target:  5'- uCGCGGCg-CG--GGGCCGGggGcGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 38741 0.67 0.801381
Target:  5'- -gGCGGCuCUCucGGGGCgGGGGucGGUCg -3'
miRNA:   3'- cgUGCCG-GAGcuUCCUGgCCUU--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 114691 0.67 0.801381
Target:  5'- -gGCGGCCgc--GGGACCGGAAugccGUCg -3'
miRNA:   3'- cgUGCCGGagcuUCCUGGCCUUc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 152540 0.67 0.801381
Target:  5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3'
miRNA:   3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5'
21573 5' -57.4 NC_004812.1 + 33179 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33152 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 2278 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 2251 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 7840 0.67 0.801381
Target:  5'- -gGCGGCuCUCucGGGGCgGGGGucGGUCg -3'
miRNA:   3'- cgUGCCG-GAGcuUCCUGgCCUU--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 46272 0.67 0.801381
Target:  5'- gGCGCGGCaggauccgcgCGggGcGGCCGG-AGGcCg -3'
miRNA:   3'- -CGUGCCGga--------GCuuC-CUGGCCuUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 97232 0.67 0.801381
Target:  5'- cGUggGGCCUCGcgcccugcGGGGCCGGguGGa- -3'
miRNA:   3'- -CGugCCGGAGCu-------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 26483 0.67 0.801381
Target:  5'- uGCGCGGg--CGggGGAcgaucgguCCGcGggGGUCg -3'
miRNA:   3'- -CGUGCCggaGCuuCCU--------GGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 121639 0.67 0.801381
Target:  5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3'
miRNA:   3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5'
21573 5' -57.4 NC_004812.1 + 96512 0.67 0.798741
Target:  5'- cCACGGCCaUCGGcgccuaccuggcgcGGGccGCCGGccuGGUCg -3'
miRNA:   3'- cGUGCCGG-AGCU--------------UCC--UGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 2203 0.68 0.796087
Target:  5'- uCGCGGCCUUGGAgccccGGcCCGGcccgccgccgaggugGGGGUCu -3'
miRNA:   3'- cGUGCCGGAGCUU-----CCuGGCC---------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33104 0.68 0.796087
Target:  5'- uCGCGGCCUUGGAgccccGGcCCGGcccgccgccgaggugGGGGUCu -3'
miRNA:   3'- cGUGCCGGAGCUU-----CCuGGCC---------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 136600 0.68 0.796087
Target:  5'- aCGCuGGCg-CGAAGGAUgacgacgccgggucgCGGGAGGUCg -3'
miRNA:   3'- cGUG-CCGgaGCUUCCUG---------------GCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 106776 0.68 0.79253
Target:  5'- -gGCGGCgUCGGgcGGGGCgcgCGGGAGGg- -3'
miRNA:   3'- cgUGCCGgAGCU--UCCUG---GCCUUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.