miRNA display CGI


Results 141 - 160 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 106776 0.68 0.79253
Target:  5'- -gGCGGCgUCGGgcGGGGCgcgCGGGAGGg- -3'
miRNA:   3'- cgUGCCGgAGCU--UCCUG---GCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 148195 0.68 0.791637
Target:  5'- -aGCGGCCucacgggUCGAGGGcuGCgGGggGGcCg -3'
miRNA:   3'- cgUGCCGG-------AGCUUCC--UGgCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 120376 0.68 0.788949
Target:  5'- cGCGCGGCCgggggcgcguacgCGGGcGACCGcGAGGG-Cg -3'
miRNA:   3'- -CGUGCCGGa------------GCUUcCUGGC-CUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 132536 0.68 0.787151
Target:  5'- cGCACGGugucguagaugggcuCCUCGAccGGCCGGggGcGg- -3'
miRNA:   3'- -CGUGCC---------------GGAGCUucCUGGCCuuC-Cag -5'
21573 5' -57.4 NC_004812.1 + 83179 0.68 0.783539
Target:  5'- cGCGCGGCCcCGGAGcucgcGgCGGGAGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCUUCc----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 78941 0.68 0.783539
Target:  5'- --cCGGCUggggUCGggGGugCGccGggGGUCg -3'
miRNA:   3'- cguGCCGG----AGCuuCCugGC--CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 27804 0.68 0.783539
Target:  5'- gGCGgGGCCgggGggGGAgCGGggGuUCg -3'
miRNA:   3'- -CGUgCCGGag-CuuCCUgGCCuuCcAG- -5'
21573 5' -57.4 NC_004812.1 + 16752 0.68 0.783539
Target:  5'- -uGgGGCUcagUCGGggggcgcgGGGGCCGGAGGGUg -3'
miRNA:   3'- cgUgCCGG---AGCU--------UCCUGGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 72221 0.68 0.783539
Target:  5'- cCGCGGCCUCGc-GGACUGcGgcGGg- -3'
miRNA:   3'- cGUGCCGGAGCuuCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 88852 0.68 0.783539
Target:  5'- cCGCcGCCUCccccGGGACCGcGAAGGUg -3'
miRNA:   3'- cGUGcCGGAGcu--UCCUGGC-CUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 16236 0.68 0.783539
Target:  5'- aGCGCGGCgUU--GGGGCUGaGGuAGGUCa -3'
miRNA:   3'- -CGUGCCGgAGcuUCCUGGC-CU-UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 31471 0.68 0.774416
Target:  5'- cGCACGcGCUgggugaugCGggGGGCCcccuGGAGGG-Cg -3'
miRNA:   3'- -CGUGC-CGGa-------GCuuCCUGG----CCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 78733 0.68 0.774416
Target:  5'- gGCGCgaggagguccgGGCCgccgcCGAA-GACCGGGAGGUg -3'
miRNA:   3'- -CGUG-----------CCGGa----GCUUcCUGGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 97970 0.68 0.76517
Target:  5'- gGCGcCGGuCCUgGGGcgguGGGCCGGGAGG-Ca -3'
miRNA:   3'- -CGU-GCC-GGAgCUU----CCUGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 105213 0.68 0.76517
Target:  5'- gGCGCgGGCCccgggcucuUCGAAGGAcacCCGGgcGGg- -3'
miRNA:   3'- -CGUG-CCGG---------AGCUUCCU---GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 131560 0.68 0.76517
Target:  5'- cGCGCGGCUaUCGAcaccgcgcAGG-CgCGGggGGUg -3'
miRNA:   3'- -CGUGCCGG-AGCU--------UCCuG-GCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 137020 0.68 0.76517
Target:  5'- cCGCGGCugcaagcccccCUCGGAGGugGCCGGGGuGGUg -3'
miRNA:   3'- cGUGCCG-----------GAGCUUCC--UGGCCUU-CCAg -5'
21573 5' -57.4 NC_004812.1 + 6051 0.68 0.76517
Target:  5'- cGCGCGGCUaUCGAcaccgcgcAGG-CgCGGggGGUg -3'
miRNA:   3'- -CGUGCCGG-AGCU--------UCCuG-GCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 141783 0.68 0.76517
Target:  5'- -aACGGCCgcgCGggGGGgCGGGccgcgcggGGGUg -3'
miRNA:   3'- cgUGCCGGa--GCuuCCUgGCCU--------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 69122 0.68 0.755811
Target:  5'- uCGCGGCCgaagaCGAcccGGCCGGcGAGGUCc -3'
miRNA:   3'- cGUGCCGGa----GCUuc-CUGGCC-UUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.