miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 194 0.66 0.880531
Target:  5'- cGCGCGcGCCgccgggGGAGGGCCc--GGGUCg -3'
miRNA:   3'- -CGUGC-CGGag----CUUCCUGGccuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 1333 0.66 0.880531
Target:  5'- cGgGCGGUCcgCGGGcGGuccGCCGGAAGGcCg -3'
miRNA:   3'- -CgUGCCGGa-GCUU-CC---UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 1424 0.69 0.726165
Target:  5'- -gGCGGCCgcgggGAGGGGCCGGGgccgcgaGGGcCg -3'
miRNA:   3'- cgUGCCGGag---CUUCCUGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 2203 0.68 0.796087
Target:  5'- uCGCGGCCUUGGAgccccGGcCCGGcccgccgccgaggugGGGGUCu -3'
miRNA:   3'- cGUGCCGGAGCUU-----CCuGGCC---------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 2251 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 2278 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 3226 0.7 0.687831
Target:  5'- cGCGCGGCgggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga--GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 3322 0.74 0.453361
Target:  5'- cGCGCcaGGCCUCGggGaaGAgCGGguGGUCg -3'
miRNA:   3'- -CGUG--CCGGAGCuuC--CUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 3379 0.73 0.509167
Target:  5'- cGCAguaGGCCUCGAGGGcggcGgCGGAGGG-Cg -3'
miRNA:   3'- -CGUg--CCGGAGCUUCC----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 3421 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 3809 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 4828 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 4862 0.67 0.843263
Target:  5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3'
miRNA:   3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 4926 0.72 0.547925
Target:  5'- cGCuGCGGCCcgCGGAGGcggcGCUGGAGGG-Cg -3'
miRNA:   3'- -CG-UGCCGGa-GCUUCC----UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 5068 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5275 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 5389 0.67 0.810085
Target:  5'- uCGCGGCg-CG--GGGCCGGggGcGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 5471 0.67 0.827016
Target:  5'- cCAgGGCCaCGggGGGgCG-AGGGUCa -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5628 0.72 0.528414
Target:  5'- -gGCGG-CUCGggGG-CCGGGcccgGGGUCg -3'
miRNA:   3'- cgUGCCgGAGCuuCCuGGCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5674 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.