miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 5702 0.69 0.707606
Target:  5'- cCAgGGCCaCGggGGGgCGG-GGGUCu -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5874 0.69 0.727134
Target:  5'- gGCGCGGgC-CGggGGGCgCGGGcgcGGGcUCa -3'
miRNA:   3'- -CGUGCCgGaGCuuCCUG-GCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 5956 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 6051 0.68 0.76517
Target:  5'- cGCGCGGCUaUCGAcaccgcgcAGG-CgCGGggGGUg -3'
miRNA:   3'- -CGUGCCGG-AGCU--------UCCuG-GCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 6290 0.66 0.861777
Target:  5'- gGCACGGCCa-GggGGAgCGGcgcccccgggcacgcGGGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCUgGCC---------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 6784 0.68 0.746346
Target:  5'- cGCGCGggcgagccguGCCUCGggGGgcgcGCCGGGcgucuggggcuGGGUg -3'
miRNA:   3'- -CGUGC----------CGGAGCuuCC----UGGCCU-----------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 6917 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 7840 0.67 0.801381
Target:  5'- -gGCGGCuCUCucGGGGCgGGGGucGGUCg -3'
miRNA:   3'- cgUGCCG-GAGcuUCCUGgCCUU--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 7940 0.74 0.435504
Target:  5'- gGCGCGGCCg-GggGGcgcguCCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCu----GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 8209 0.66 0.878439
Target:  5'- -aGCGGCCgggggcccgcgUCGGAcgcgcccggcggccGGGCCGG-GGGUCc -3'
miRNA:   3'- cgUGCCGG-----------AGCUU--------------CCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 8352 0.71 0.577591
Target:  5'- gGCGCGGCCgccccaccgcgUCGgcGGccGCCGGGgcccgGGGUCc -3'
miRNA:   3'- -CGUGCCGG-----------AGCuuCC--UGGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 9839 0.67 0.827845
Target:  5'- cGUugGGCCUCGAcgacgcucacgccgAccguccgcccgccuuGGACUGGAcgGGGUUu -3'
miRNA:   3'- -CGugCCGGAGCU--------------U---------------CCUGGCCU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 10378 0.7 0.677871
Target:  5'- aGUAC-GCCUCGggGGucuggGCCGGcGGGGUg -3'
miRNA:   3'- -CGUGcCGGAGCuuCC-----UGGCC-UUCCAg -5'
21573 5' -57.4 NC_004812.1 + 11337 0.66 0.887365
Target:  5'- gGCugGGCCgaCGGuguGGGCucgaCGGGAGGg- -3'
miRNA:   3'- -CGugCCGGa-GCUu--CCUG----GCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 11569 0.72 0.528414
Target:  5'- uCGCGGCgUCGcuGGGGcACCGGggGGg- -3'
miRNA:   3'- cGUGCCGgAGC--UUCC-UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 11608 0.69 0.727134
Target:  5'- cGgGCGGgCUCGgcGuGCCGGGAGcGUCc -3'
miRNA:   3'- -CgUGCCgGAGCuuCcUGGCCUUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 12375 0.66 0.851112
Target:  5'- cGCcCGGCCgCGc--GGCCGGGAGGg- -3'
miRNA:   3'- -CGuGCCGGaGCuucCUGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 13020 0.69 0.716428
Target:  5'- -gGCGGCCugaucgccgggggUCGcGGGGCCGGccccGGUCg -3'
miRNA:   3'- cgUGCCGG-------------AGCuUCCUGGCCuu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 13255 1.1 0.001935
Target:  5'- aGCACGGCCUCGAAGGACCGGAAGGUCc -3'
miRNA:   3'- -CGUGCCGGAGCUUCCUGGCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 13403 0.67 0.827016
Target:  5'- gGCGCGGC---GggGGugacgGCCGGAGGGg- -3'
miRNA:   3'- -CGUGCCGgagCuuCC-----UGGCCUUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.