miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 13475 0.67 0.835229
Target:  5'- cCACGGUCagCGc-GGGCUGGuGGGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 13539 0.66 0.851112
Target:  5'- cGCACGGCC-CGucGGucucucucucACCGaGggGGg- -3'
miRNA:   3'- -CGUGCCGGaGCuuCC----------UGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 13695 0.69 0.697745
Target:  5'- cGCG-GGCCcgcagGAGGGGCUGGcGGGUCg -3'
miRNA:   3'- -CGUgCCGGag---CUUCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 14922 0.66 0.878439
Target:  5'- cCGCGGUCUCGAAGGcgggcgcgugcaugACgaGGcccAGGUCg -3'
miRNA:   3'- cGUGCCGGAGCUUCC--------------UGg-CCu--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 15223 0.66 0.858769
Target:  5'- aGCACGGCgUaguacacggCGAcgGGGACgCuGggGGUCu -3'
miRNA:   3'- -CGUGCCGgA---------GCU--UCCUG-GcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 15731 0.75 0.4095
Target:  5'- -gACGGCgaUCGAGGGGCCGcGggGGcCg -3'
miRNA:   3'- cgUGCCGg-AGCUUCCUGGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 16236 0.68 0.783539
Target:  5'- aGCGCGGCgUU--GGGGCUGaGGuAGGUCa -3'
miRNA:   3'- -CGUGCCGgAGcuUCCUGGC-CU-UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 16305 0.66 0.858012
Target:  5'- cGCAUGGCggaCGAgcGGGGgCGGAgaccgauGGGUCg -3'
miRNA:   3'- -CGUGCCGga-GCU--UCCUgGCCU-------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 16752 0.68 0.783539
Target:  5'- -uGgGGCUcagUCGGggggcgcgGGGGCCGGAGGGUg -3'
miRNA:   3'- cgUgCCGG---AGCU--------UCCUGGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 16856 0.81 0.183145
Target:  5'- cGCGCGGUCgCGggGGACCGcGAccuGGUCg -3'
miRNA:   3'- -CGUGCCGGaGCuuCCUGGC-CUu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 16922 0.71 0.607594
Target:  5'- cGCAUGGCCUgCG-AGGugCGGcAGGc- -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCugGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 17004 0.7 0.667876
Target:  5'- gGCGCGgagucagaGCCUCGA---GCCGGggGGUg -3'
miRNA:   3'- -CGUGC--------CGGAGCUuccUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 17214 0.78 0.279159
Target:  5'- uCGCGGCCggugccgcuggagCGggGGACaCGGAGGGUg -3'
miRNA:   3'- cGUGCCGGa------------GCuuCCUG-GCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 17596 0.68 0.747297
Target:  5'- gGCugGGCgUCGGAGGacuuccgcGCCGGccucguguccugguGGUCg -3'
miRNA:   3'- -CGugCCGgAGCUUCC--------UGGCCuu------------CCAG- -5'
21573 5' -57.4 NC_004812.1 + 18849 0.68 0.746346
Target:  5'- uCGCGcGCCUCGGcccagcGGGuCCcGggGGUCg -3'
miRNA:   3'- cGUGC-CGGAGCU------UCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 19291 0.67 0.816085
Target:  5'- uGCGCGGUgUCGAGGGGgcgaacgcgggcccCCaGGuacguguaGAGGUCg -3'
miRNA:   3'- -CGUGCCGgAGCUUCCU--------------GG-CC--------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 19890 0.67 0.827016
Target:  5'- gGCGCGGCggCGggGGACgCGGc-GGcCc -3'
miRNA:   3'- -CGUGCCGgaGCuuCCUG-GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 20117 0.66 0.887365
Target:  5'- cGCAgCGGCgCgCGggGGAgCGGAccGGGcCc -3'
miRNA:   3'- -CGU-GCCG-GaGCuuCCUgGCCU--UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 20238 0.69 0.727134
Target:  5'- aGCGCGGCCgcc-GGGACCuu-GGGUCc -3'
miRNA:   3'- -CGUGCCGGagcuUCCUGGccuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 21708 0.68 0.746346
Target:  5'- aCGCGGCaaacuccuuCUCcagccuggagguGAGGGACCGGggGG-Cg -3'
miRNA:   3'- cGUGCCG---------GAG------------CUUCCUGGCCuuCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.