miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 22314 0.69 0.697745
Target:  5'- -gGgGGCCUCGGcgccGGGGCUGGAccuGGUUc -3'
miRNA:   3'- cgUgCCGGAGCU----UCCUGGCCUu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 22908 0.69 0.727134
Target:  5'- gGCGCGuGCCUgCGggGG--CGGAgcgugGGGUCg -3'
miRNA:   3'- -CGUGC-CGGA-GCuuCCugGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 23476 0.66 0.873484
Target:  5'- cGCGCGGC---GAGGGAa-GGAGGGUg -3'
miRNA:   3'- -CGUGCCGgagCUUCCUggCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 24888 0.7 0.676874
Target:  5'- gGCGCaGGCUcacccccuccucgUCGAGGGugCGGugccuuccgaugAAGGUCa -3'
miRNA:   3'- -CGUG-CCGG-------------AGCUUCCugGCC------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 25279 0.66 0.881224
Target:  5'- cGCACgccgGGCCgggcgaucgagcggaCGAAGGcCCGGAAGcUCa -3'
miRNA:   3'- -CGUG----CCGGa--------------GCUUCCuGGCCUUCcAG- -5'
21573 5' -57.4 NC_004812.1 + 25506 0.69 0.727134
Target:  5'- aCGCGGCCUCGcAGGACCccgccGAcGGGcCg -3'
miRNA:   3'- cGUGCCGGAGCuUCCUGGc----CU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 25895 0.69 0.697745
Target:  5'- gGCuCGGCCUCGGagucGGGGUCGGAgucGGaGUCg -3'
miRNA:   3'- -CGuGCCGGAGCU----UCCUGGCCU---UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 26094 0.67 0.810085
Target:  5'- gGCcuCGGaCUCGGAGGACuCGGAGGa-- -3'
miRNA:   3'- -CGu-GCCgGAGCUUCCUG-GCCUUCcag -5'
21573 5' -57.4 NC_004812.1 + 26231 0.67 0.810085
Target:  5'- -gGCGGgaCUCGAGGGGCCGGucuccgaccGGGa- -3'
miRNA:   3'- cgUGCCg-GAGCUUCCUGGCCu--------UCCag -5'
21573 5' -57.4 NC_004812.1 + 26272 0.71 0.614625
Target:  5'- aCGCGGCCgCGcGGGugCcccgcggcgacaggGGAAGGUCg -3'
miRNA:   3'- cGUGCCGGaGCuUCCugG--------------CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 26327 0.71 0.627696
Target:  5'- uCGCGGCCgcUCGggGGuCCcGggGGUg -3'
miRNA:   3'- cGUGCCGG--AGCuuCCuGGcCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 26396 0.66 0.880531
Target:  5'- gGCGC-GCUUCG-GGGAucgcCCGuGggGGUCg -3'
miRNA:   3'- -CGUGcCGGAGCuUCCU----GGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 26483 0.67 0.801381
Target:  5'- uGCGCGGg--CGggGGAcgaucgguCCGcGggGGUCg -3'
miRNA:   3'- -CGUGCCggaGCuuCCU--------GGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 27010 0.67 0.818632
Target:  5'- aGgACGGCCcCGccGGGGCCGcGggGGa- -3'
miRNA:   3'- -CgUGCCGGaGCu-UCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 27804 0.68 0.783539
Target:  5'- gGCGgGGCCgggGggGGAgCGGggGuUCg -3'
miRNA:   3'- -CGUgCCGGag-CuuCCUgGCCuuCcAG- -5'
21573 5' -57.4 NC_004812.1 + 28972 0.67 0.827016
Target:  5'- cGCGgGGCCUCcccgGAcuGGGACUGGGacuGGGa- -3'
miRNA:   3'- -CGUgCCGGAG----CU--UCCUGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 29006 0.67 0.843263
Target:  5'- aGCGCGGCC-CGGgccgccccgAGGACugguagacgCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCUG---------GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 29360 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 29790 0.67 0.827016
Target:  5'- gGCGCGGC-----GGGGCCcGggGGUCg -3'
miRNA:   3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 29931 0.73 0.509167
Target:  5'- gGCgACGGCg-CGAGGGAgCGGggGGcCg -3'
miRNA:   3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.