miRNA display CGI


Results 81 - 100 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 30177 0.67 0.846425
Target:  5'- cGCGCGGCgggCUCGGcgcgcgcgagggcguGGGGgaGGggGGUg -3'
miRNA:   3'- -CGUGCCG---GAGCU---------------UCCUggCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 30737 0.67 0.810085
Target:  5'- aGCGgGGCgggaGggGGACgGGAGGGg- -3'
miRNA:   3'- -CGUgCCGgag-CuuCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 30858 0.73 0.499653
Target:  5'- cGCcCGGCCaUGggGGGCCGaGggGG-Cg -3'
miRNA:   3'- -CGuGCCGGaGCuuCCUGGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 30942 0.72 0.518755
Target:  5'- cGCGCGGCC-CGAGGccucCCcGAGGGUCa -3'
miRNA:   3'- -CGUGCCGGaGCUUCcu--GGcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 31240 0.69 0.717405
Target:  5'- uGCccguCGGCgUCGGcaaAGcGcGCCGGGAGGUCg -3'
miRNA:   3'- -CGu---GCCGgAGCU---UC-C-UGGCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 31471 0.68 0.774416
Target:  5'- cGCACGcGCUgggugaugCGggGGGCCcccuGGAGGG-Cg -3'
miRNA:   3'- -CGUGC-CGGa-------GCuuCCUGG----CCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 32074 0.7 0.657853
Target:  5'- cGCGgGGCC-CGuGGGGCCcGGccccgGAGGUCg -3'
miRNA:   3'- -CGUgCCGGaGCuUCCUGG-CC-----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 32234 0.66 0.880531
Target:  5'- cGgGCGGUCcgCGGGcGGuccGCCGGAAGGcCg -3'
miRNA:   3'- -CgUGCCGGa-GCUU-CC---UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 33104 0.68 0.796087
Target:  5'- uCGCGGCCUUGGAgccccGGcCCGGcccgccgccgaggugGGGGUCu -3'
miRNA:   3'- cGUGCCGGAGCUU-----CCuGGCC---------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33152 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33179 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 33934 0.76 0.330184
Target:  5'- uGCACcggcuccuGGCCUCGGggGGGGCCGGGGucgcGGUCc -3'
miRNA:   3'- -CGUG--------CCGGAGCU--UCCUGGCCUU----CCAG- -5'
21573 5' -57.4 NC_004812.1 + 35013 0.7 0.667876
Target:  5'- aGguCGGCgagCUCGGcgGGGGCCcGggGGUCg -3'
miRNA:   3'- -CguGCCG---GAGCU--UCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 35094 0.66 0.865492
Target:  5'- cGCGCGaGCgaCGAGGGcagcgucACCGGGaaccgcagcgucAGGUCc -3'
miRNA:   3'- -CGUGC-CGgaGCUUCC-------UGGCCU------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 35535 0.7 0.677871
Target:  5'- aGCAUGGCgCgCGggGGGCgCGGgcGGg- -3'
miRNA:   3'- -CGUGCCG-GaGCuuCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 35729 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 35969 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36176 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 36372 0.67 0.827016
Target:  5'- cCAgGGCCaCGggGGGgCG-AGGGUCa -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36447 0.7 0.667876
Target:  5'- cCGCGGCCgCGuugucGAGGAgCGGggGGg- -3'
miRNA:   3'- cGUGCCGGaGC-----UUCCUgGCCuuCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.