miRNA display CGI


Results 101 - 120 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 36529 0.72 0.528414
Target:  5'- -gGCGG-CUCGggGG-CCGGGcccgGGGUCg -3'
miRNA:   3'- cgUGCCgGAGCuuCCuGGCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36575 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36603 0.69 0.707606
Target:  5'- cCAgGGCCaCGggGGGgCGG-GGGUCu -3'
miRNA:   3'- cGUgCCGGaGCuuCCUgGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36775 0.69 0.727134
Target:  5'- gGCGCGGgC-CGggGGGCgCGGGcgcGGGcUCa -3'
miRNA:   3'- -CGUGCCgGaGCuuCCUG-GCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 36857 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 37191 0.66 0.861777
Target:  5'- gGCACGGCCa-GggGGAgCGGcgcccccgggcacgcGGGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCUgGCC---------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 37685 0.68 0.746346
Target:  5'- cGCGCGggcgagccguGCCUCGggGGgcgcGCCGGGcgucuggggcuGGGUg -3'
miRNA:   3'- -CGUGC----------CGGAGCuuCC----UGGCCU-----------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 37818 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 38741 0.67 0.801381
Target:  5'- -gGCGGCuCUCucGGGGCgGGGGucGGUCg -3'
miRNA:   3'- cgUGCCG-GAGcuUCCUGgCCUU--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 38841 0.74 0.435504
Target:  5'- gGCGCGGCCg-GggGGcgcguCCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCu----GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 38901 0.71 0.587563
Target:  5'- cGCACGGCCUUGcccaucacGAGG-CCGuGAcgAGGUUg -3'
miRNA:   3'- -CGUGCCGGAGC--------UUCCuGGC-CU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 39110 0.66 0.878439
Target:  5'- -aGCGGCCgggggcccgcgUCGGAcgcgcccggcggccGGGCCGG-GGGUCc -3'
miRNA:   3'- cgUGCCGG-----------AGCUU--------------CCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 39253 0.71 0.577591
Target:  5'- gGCGCGGCCgccccaccgcgUCGgcGGccGCCGGGgcccgGGGUCc -3'
miRNA:   3'- -CGUGCCGG-----------AGCuuCC--UGGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 39484 0.73 0.48087
Target:  5'- -gGCGGCgUUGAGGGugCGGc-GGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCugGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 39850 0.69 0.707606
Target:  5'- -gGCGGUg-CGggGGGCCGGggGcUCc -3'
miRNA:   3'- cgUGCCGgaGCuuCCUGGCCuuCcAG- -5'
21573 5' -57.4 NC_004812.1 + 40956 0.67 0.843263
Target:  5'- gGUGCuGGCCUaCGAGGGAUcucgccacugCGGccGGUCu -3'
miRNA:   3'- -CGUG-CCGGA-GCUUCCUG----------GCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44003 0.71 0.587563
Target:  5'- gGC-CGGCCUCcucGGAgCCGGggGcGUCg -3'
miRNA:   3'- -CGuGCCGGAGcuuCCU-GGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 44764 0.66 0.858769
Target:  5'- -gGCGGCC-CGAugAGGGC--GAGGGUCu -3'
miRNA:   3'- cgUGCCGGaGCU--UCCUGgcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44989 0.71 0.61764
Target:  5'- cCGCGGCCaCGAgccAGGuGCCGGAGGcGUUg -3'
miRNA:   3'- cGUGCCGGaGCU---UCC-UGGCCUUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 45252 0.67 0.835229
Target:  5'- aGCugGGCgaCGAgcuggGGGGcCCGcGGGGUCg -3'
miRNA:   3'- -CGugCCGgaGCU-----UCCU-GGCcUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.