miRNA display CGI


Results 121 - 140 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 45577 0.66 0.876328
Target:  5'- cGCACaGGCCguuccucgcgcccaCGcucAGGGCCaGGAAGGUUc -3'
miRNA:   3'- -CGUG-CCGGa-------------GCu--UCCUGG-CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 46272 0.67 0.801381
Target:  5'- gGCGCGGCaggauccgcgCGggGcGGCCGG-AGGcCg -3'
miRNA:   3'- -CGUGCCGga--------GCuuC-CUGGCCuUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 46477 0.7 0.657853
Target:  5'- -gACGGCCUCagGGAGGGCCccgagcacgaGGuuGGUCc -3'
miRNA:   3'- cgUGCCGGAG--CUUCCUGG----------CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 47184 0.69 0.697745
Target:  5'- gGCG-GGCCUCGggGGcccGCCGGGccacccguGGGg- -3'
miRNA:   3'- -CGUgCCGGAGCuuCC---UGGCCU--------UCCag -5'
21573 5' -57.4 NC_004812.1 + 47781 0.76 0.345104
Target:  5'- uCGCGGCC-CGAGuGACCGGAGGG-Cg -3'
miRNA:   3'- cGUGCCGGaGCUUcCUGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 48486 0.72 0.528414
Target:  5'- cGCGCGGCCg-GggGcucGACCGGcguGGUCu -3'
miRNA:   3'- -CGUGCCGGagCuuC---CUGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 48955 0.67 0.843263
Target:  5'- cGCgGCGaGCCUCGAcGGGGCCGucGAGGcCc -3'
miRNA:   3'- -CG-UGC-CGGAGCU-UCCUGGCc-UUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 49605 0.66 0.879836
Target:  5'- gGCACGGCacggUGGgaggggcgcccgcGGGGCgGGAGGGg- -3'
miRNA:   3'- -CGUGCCGga--GCU-------------UCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 50467 0.66 0.887365
Target:  5'- aGCuCGGCCUCGgcGGgcgcguguggacGCCGGGcgccgAGG-Cg -3'
miRNA:   3'- -CGuGCCGGAGCuuCC------------UGGCCU-----UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 52042 0.67 0.835229
Target:  5'- cGCACGGCCguggCGAacacgcGGGcaucggccACCGG-GGGUg -3'
miRNA:   3'- -CGUGCCGGa---GCU------UCC--------UGGCCuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 54209 0.67 0.843263
Target:  5'- uCACcuCCUCGAAGGGCaCGGGGgcgcGGUCc -3'
miRNA:   3'- cGUGccGGAGCUUCCUG-GCCUU----CCAG- -5'
21573 5' -57.4 NC_004812.1 + 54521 0.67 0.843263
Target:  5'- gGC-CGGCCUCGAcGGACgCGuu-GGUg -3'
miRNA:   3'- -CGuGCCGGAGCUuCCUG-GCcuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 54604 0.66 0.866228
Target:  5'- gGCGUGGCCgCGGggacgggcGGGGCCGGAgAGGcCc -3'
miRNA:   3'- -CGUGCCGGaGCU--------UCCUGGCCU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 54676 0.66 0.850336
Target:  5'- -aGCGGCCgggUCGcggcgaggagggcGAGGGCCaGGAGGGg- -3'
miRNA:   3'- cgUGCCGG---AGC-------------UUCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 55261 0.79 0.222569
Target:  5'- aGCGCGGUgUUGggGGGCUGGGccaggcuguGGGUCg -3'
miRNA:   3'- -CGUGCCGgAGCuuCCUGGCCU---------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 55477 0.7 0.657853
Target:  5'- cGCACGcgcGCCgCGAAGccguucgacacGGCCGcGAAGGUCg -3'
miRNA:   3'- -CGUGC---CGGaGCUUC-----------CUGGC-CUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 57988 0.66 0.880531
Target:  5'- aGCGCGGCCgCGAcGG-CCGcGAcGGcCa -3'
miRNA:   3'- -CGUGCCGGaGCUuCCuGGC-CUuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 58270 0.76 0.330184
Target:  5'- cGCGCGGCCaUCac-GGGCCGGAggAGGUUg -3'
miRNA:   3'- -CGUGCCGG-AGcuuCCUGGCCU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 58401 0.66 0.858769
Target:  5'- -gGCGGCCgccgccUGGAGG-CUGGggGGg- -3'
miRNA:   3'- cgUGCCGGa-----GCUUCCuGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 59506 0.69 0.707606
Target:  5'- gGCGCGGCCccCGgcGGACaggGGgcGGUa -3'
miRNA:   3'- -CGUGCCGGa-GCuuCCUGg--CCuuCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.