miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 156245 0.67 0.810085
Target:  5'- aGCGgGGCgggaGggGGACgGGAGGGg- -3'
miRNA:   3'- -CGUgCCGgag-CuuCCUGgCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 156053 0.68 0.746346
Target:  5'- aCGCGGCCgcgcgCGccGGGgCGGGAGG-Cg -3'
miRNA:   3'- cGUGCCGGa----GCuuCCUgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 155560 0.67 0.835229
Target:  5'- cCGCGGCCgggcaGGAGGAgaCCGcGGGGUUg -3'
miRNA:   3'- cGUGCCGGag---CUUCCU--GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 155439 0.75 0.376374
Target:  5'- gGCgACGGCgaCGAGGGAgCGGggGGcCg -3'
miRNA:   3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 155298 0.67 0.827016
Target:  5'- gGCGCGGC-----GGGGCCcGggGGUCg -3'
miRNA:   3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 155137 0.75 0.376374
Target:  5'- cCGCGGCggCGggGGGCCGGGucgagggcGGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCUu-------CCAG- -5'
21573 5' -57.4 NC_004812.1 + 154956 0.66 0.866228
Target:  5'- cCGCGGCCaaCGggGGAgCGGcgcGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUgGCCuucCAG- -5'
21573 5' -57.4 NC_004812.1 + 154868 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 154515 0.67 0.843263
Target:  5'- aGCGCGGCC-CGGgccgccccgAGGACugguagacgCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCUG---------GCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 154481 0.67 0.827016
Target:  5'- cGCGgGGCCUCcccgGAcuGGGACUGGGacuGGGa- -3'
miRNA:   3'- -CGUgCCGGAG----CU--UCCUGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 154477 0.66 0.851112
Target:  5'- gGCGCGGCCgggcUCGAGucguccgucgucGGGCgGGcgggcggcgGAGGUCc -3'
miRNA:   3'- -CGUGCCGG----AGCUU------------CCUGgCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 154035 0.67 0.843263
Target:  5'- -gGCGGCgUCGGAGG-CgGGGucGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCuGgCCUucCAG- -5'
21573 5' -57.4 NC_004812.1 + 153981 0.67 0.818632
Target:  5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3'
miRNA:   3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 153187 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 153115 0.66 0.873484
Target:  5'- gGCGCcGCCcCGggGGcggGCgCGGggGGcUCg -3'
miRNA:   3'- -CGUGcCGGaGCuuCC---UG-GCCuuCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 152983 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 152863 0.67 0.818632
Target:  5'- gGCugGGCCUgagCGgcGGGCCuGGGcuGGGcCu -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUGG-CCU--UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 152785 0.67 0.843263
Target:  5'- gGCGgGGCCUggggCGggGccgcaGGCCGGGcgcgggccugAGGUCg -3'
miRNA:   3'- -CGUgCCGGA----GCuuC-----CUGGCCU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 152718 0.74 0.4172
Target:  5'- -gGCGGCCUCGGAGGcggagGCCGGGcgcuugcGGGcCg -3'
miRNA:   3'- cgUGCCGGAGCUUCC-----UGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 152540 0.67 0.801381
Target:  5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3'
miRNA:   3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.