miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 152519 0.67 0.818632
Target:  5'- aGgACGGCCcCGccGGGGCCGcGggGGa- -3'
miRNA:   3'- -CgUGCCGGaGCu-UCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 151603 0.67 0.810085
Target:  5'- gGCcuCGGaCUCGGAGGACuCGGAGGa-- -3'
miRNA:   3'- -CGu-GCCgGAGCUUCCUG-GCCUUCcag -5'
21573 5' -57.4 NC_004812.1 + 151403 0.69 0.697745
Target:  5'- gGCuCGGCCUCGGagucGGGGUCGGAgucGGaGUCg -3'
miRNA:   3'- -CGuGCCGGAGCU----UCCUGGCCU---UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 151014 0.69 0.727134
Target:  5'- aCGCGGCCUCGcAGGACCccgccGAcGGGcCg -3'
miRNA:   3'- cGUGCCGGAGCuUCCUGGc----CU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 148984 0.66 0.873484
Target:  5'- cGCGCGGC---GAGGGAa-GGAGGGUg -3'
miRNA:   3'- -CGUGCCGgagCUUCCUggCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 148545 0.69 0.727134
Target:  5'- gGCGCGGCggggUCGcGGGccggccgggcGCCGGggGGUg -3'
miRNA:   3'- -CGUGCCGg---AGCuUCC----------UGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 148416 0.69 0.727134
Target:  5'- gGCGCGuGCCUgCGggGG--CGGAgcgugGGGUCg -3'
miRNA:   3'- -CGUGC-CGGA-GCuuCCugGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 148195 0.68 0.791637
Target:  5'- -aGCGGCCucacgggUCGAGGGcuGCgGGggGGcCg -3'
miRNA:   3'- cgUGCCGG-------AGCUUCC--UGgCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 146791 0.66 0.873484
Target:  5'- -aACGGCCgaacacagUCGAAGGGggGGAGGGa- -3'
miRNA:   3'- cgUGCCGG--------AGCUUCCUggCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 145987 0.7 0.65685
Target:  5'- uGCACGGCCgcaaaacCGggGGugCGGcucuaacgacgggGAGGa- -3'
miRNA:   3'- -CGUGCCGGa------GCuuCCugGCC-------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 145819 0.67 0.818632
Target:  5'- cGUGCGGCCccgccggagCGAAGG-CCGGGcccGGGg- -3'
miRNA:   3'- -CGUGCCGGa--------GCUUCCuGGCCU---UCCag -5'
21573 5' -57.4 NC_004812.1 + 145794 0.7 0.687831
Target:  5'- aGCGCGagcGCCUCGGGcucGGugUGGGcggcgGGGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCUU---CCugGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 145206 0.7 0.64781
Target:  5'- aGCACGGCgUCGcGGuACCGGAAcgcGGUg -3'
miRNA:   3'- -CGUGCCGgAGCuUCcUGGCCUU---CCAg -5'
21573 5' -57.4 NC_004812.1 + 142664 0.67 0.827016
Target:  5'- -aACGGCUccuUCcuGGAGGACCuGGAGGUUc -3'
miRNA:   3'- cgUGCCGG---AG--CUUCCUGGcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 141783 0.68 0.76517
Target:  5'- -aACGGCCgcgCGggGGGgCGGGccgcgcggGGGUg -3'
miRNA:   3'- cgUGCCGGa--GCuuCCUgGCCU--------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 138799 0.67 0.834415
Target:  5'- --gUGGCCgCGAAcccccucuuugacGGGCCGGAGGGa- -3'
miRNA:   3'- cguGCCGGaGCUU-------------CCUGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 138393 0.68 0.755811
Target:  5'- -aGCGgcGCCUCGAcgcGGAguaCUGGggGGUCg -3'
miRNA:   3'- cgUGC--CGGAGCUu--CCU---GGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 138304 0.67 0.843263
Target:  5'- cGCgGCGGgCUCGGAGGguggcGCCGGcgcgGAGGa- -3'
miRNA:   3'- -CG-UGCCgGAGCUUCC-----UGGCC----UUCCag -5'
21573 5' -57.4 NC_004812.1 + 137959 0.66 0.858769
Target:  5'- gGCGCGGCggcccCUCGucGGGgCGG--GGUCg -3'
miRNA:   3'- -CGUGCCG-----GAGCuuCCUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 137151 0.7 0.637755
Target:  5'- gGCGCGGUCgCGGacguauucgAGGugCGGGAGG-Cg -3'
miRNA:   3'- -CGUGCCGGaGCU---------UCCugGCCUUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.