miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 137020 0.68 0.76517
Target:  5'- cCGCGGCugcaagcccccCUCGGAGGugGCCGGGGuGGUg -3'
miRNA:   3'- cGUGCCG-----------GAGCUUCC--UGGCCUU-CCAg -5'
21573 5' -57.4 NC_004812.1 + 136600 0.68 0.796087
Target:  5'- aCGCuGGCg-CGAAGGAUgacgacgccgggucgCGGGAGGUCg -3'
miRNA:   3'- cGUG-CCGgaGCUUCCUG---------------GCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 135905 0.77 0.308705
Target:  5'- gGCGCGGCUcgcaGAGGGACCGGAAGc-- -3'
miRNA:   3'- -CGUGCCGGag--CUUCCUGGCCUUCcag -5'
21573 5' -57.4 NC_004812.1 + 135838 0.74 0.453361
Target:  5'- cGCugggacuCGGCgUCGggGGGCuCGGAGGG-Ca -3'
miRNA:   3'- -CGu------GCCGgAGCuuCCUG-GCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 135588 0.7 0.64781
Target:  5'- uGCGCGGCCUCaacGGcCCGGuGGGg- -3'
miRNA:   3'- -CGUGCCGGAGcuuCCuGGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 135359 0.73 0.48087
Target:  5'- cGCGCGcGCUUCu-GGGGCCacgGGGAGGUCc -3'
miRNA:   3'- -CGUGC-CGGAGcuUCCUGG---CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 134647 0.66 0.858769
Target:  5'- gGCugGGCC-CGGAGGuCCugcaGGAGG-Cg -3'
miRNA:   3'- -CGugCCGGaGCUUCCuGGc---CUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 132772 0.66 0.880531
Target:  5'- aGgGCGGCgC-CGGGccGGGCCGGccccGGGUCg -3'
miRNA:   3'- -CgUGCCG-GaGCUU--CCUGGCCu---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 132536 0.68 0.787151
Target:  5'- cGCACGGugucguagaugggcuCCUCGAccGGCCGGggGcGg- -3'
miRNA:   3'- -CGUGCC---------------GGAGCUucCUGGCCuuC-Cag -5'
21573 5' -57.4 NC_004812.1 + 131560 0.68 0.76517
Target:  5'- cGCGCGGCUaUCGAcaccgcgcAGG-CgCGGggGGUg -3'
miRNA:   3'- -CGUGCCGG-AGCU--------UCCuG-GCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 131453 0.67 0.810085
Target:  5'- uGCuCGGCCUUGGaccGGGACCuGGuGGGc- -3'
miRNA:   3'- -CGuGCCGGAGCU---UCCUGG-CCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 130897 0.67 0.810085
Target:  5'- uCGCGGCg-CG--GGGCCGGggGcGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 130846 0.7 0.687831
Target:  5'- -gACGGCCUCGAcgcucaagugGGGGCCccGggGGcCg -3'
miRNA:   3'- cgUGCCGGAGCU----------UCCUGGc-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 130725 0.67 0.843263
Target:  5'- gGCGCGGgCgccgCGGAGGGCCGGccGc-- -3'
miRNA:   3'- -CGUGCCgGa---GCUUCCUGGCCuuCcag -5'
21573 5' -57.4 NC_004812.1 + 130637 0.71 0.607594
Target:  5'- cGCgACGGcCCUCGAGGaGGCgGGGAuGGUa -3'
miRNA:   3'- -CG-UGCC-GGAGCUUC-CUGgCCUU-CCAg -5'
21573 5' -57.4 NC_004812.1 + 130472 0.67 0.823683
Target:  5'- cGgGCGGCCggcggcggcgaggCGggGGGCgaCGGGuccGGGUCc -3'
miRNA:   3'- -CgUGCCGGa------------GCuuCCUG--GCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 130434 0.72 0.547925
Target:  5'- cGCuGCGGCCcgCGGAGGcggcGCUGGAGGG-Cg -3'
miRNA:   3'- -CG-UGCCGGa-GCUUCC----UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 130370 0.67 0.843263
Target:  5'- gGCGCGGCCgUGAAGcGGCCcGuGGcGUCg -3'
miRNA:   3'- -CGUGCCGGaGCUUC-CUGGcCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 129724 0.67 0.810085
Target:  5'- cCGCGGCggCGucGGGCCGGggGcGg- -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-Cag -5'
21573 5' -57.4 NC_004812.1 + 129317 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.