miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 128929 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128887 0.73 0.509167
Target:  5'- cGCAguaGGCCUCGAGGGcggcGgCGGAGGG-Cg -3'
miRNA:   3'- -CGUg--CCGGAGCUUCC----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 128830 0.74 0.453361
Target:  5'- cGCGCcaGGCCUCGggGaaGAgCGGguGGUCg -3'
miRNA:   3'- -CGUG--CCGGAGCuuC--CUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128735 0.7 0.637755
Target:  5'- cGCGCGGCggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga-GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 127604 0.71 0.587563
Target:  5'- uGCuggaaGGCCUCGGAGcGGuggagcgcCCGGAAGGUg -3'
miRNA:   3'- -CGug---CCGGAGCUUC-CU--------GGCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 127519 0.67 0.822006
Target:  5'- cGCGgGGCCggCGuccucggcgaggcucGAGGcCCGGAAGGa- -3'
miRNA:   3'- -CGUgCCGGa-GC---------------UUCCuGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 126932 0.69 0.726165
Target:  5'- -gGCGGCCgcgggGAGGGGCCGGGgccgcgaGGGcCg -3'
miRNA:   3'- cgUGCCGGag---CUUCCUGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 125703 0.66 0.880531
Target:  5'- cGCGCGcGCCgccgggGGAGGGCCc--GGGUCg -3'
miRNA:   3'- -CGUGC-CGGag----CUUCCUGGccuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 125152 0.68 0.746346
Target:  5'- aCGCGGCCgcgcgCGccGGGgCGGGAGG-Cg -3'
miRNA:   3'- cGUGCCGGa----GCuuCCUgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 124659 0.67 0.835229
Target:  5'- cCGCGGCCgggcaGGAGGAgaCCGcGGGGUUg -3'
miRNA:   3'- cGUGCCGGag---CUUCCU--GGCcUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 124333 0.74 0.426729
Target:  5'- uCACGGCCcCGggGGgggacgccgcggACCGGGAGGa- -3'
miRNA:   3'- cGUGCCGGaGCuuCC------------UGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 124236 0.75 0.376374
Target:  5'- cCGCGGCggCGggGGGCCGGGucgagggcGGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCUu-------CCAG- -5'
21573 5' -57.4 NC_004812.1 + 124055 0.66 0.866228
Target:  5'- cCGCGGCCaaCGggGGAgCGGcgcGUCa -3'
miRNA:   3'- cGUGCCGGa-GCuuCCUgGCCuucCAG- -5'
21573 5' -57.4 NC_004812.1 + 123576 0.66 0.851112
Target:  5'- gGCGCGGCCgggcUCGAGucguccgucgucGGGCgGGcgggcggcgGAGGUCc -3'
miRNA:   3'- -CGUGCCGG----AGCUU------------CCUGgCC---------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 123134 0.67 0.843263
Target:  5'- -gGCGGCgUCGGAGG-CgGGGucGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCuGgCCUucCAG- -5'
21573 5' -57.4 NC_004812.1 + 123080 0.67 0.818632
Target:  5'- gGCGCaGGUCUCGcggggcGGGGCCGGcgcgGAGaGUCc -3'
miRNA:   3'- -CGUG-CCGGAGCu-----UCCUGGCC----UUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 122286 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 122214 0.66 0.873484
Target:  5'- gGCGCcGCCcCGggGGcggGCgCGGggGGcUCg -3'
miRNA:   3'- -CGUGcCGGaGCuuCC---UG-GCCuuCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 122082 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 121962 0.67 0.818632
Target:  5'- gGCugGGCCUgagCGgcGGGCCuGGGcuGGGcCu -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUGG-CCU--UCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.