miRNA display CGI


Results 81 - 100 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 121884 0.67 0.843263
Target:  5'- gGCGgGGCCUggggCGggGccgcaGGCCGGGcgcgggccugAGGUCg -3'
miRNA:   3'- -CGUgCCGGA----GCuuC-----CUGGCCU----------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 121817 0.74 0.4172
Target:  5'- -gGCGGCCUCGGAGGcggagGCCGGGcgcuugcGGGcCg -3'
miRNA:   3'- cgUGCCGGAGCUUCC-----UGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 121639 0.67 0.801381
Target:  5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3'
miRNA:   3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5'
21573 5' -57.4 NC_004812.1 + 121015 0.66 0.858769
Target:  5'- cGCAC-GCCUCGgcGGucGCCGucGGGUg -3'
miRNA:   3'- -CGUGcCGGAGCuuCC--UGGCcuUCCAg -5'
21573 5' -57.4 NC_004812.1 + 120376 0.68 0.788949
Target:  5'- cGCGCGGCCgggggcgcguacgCGGGcGACCGcGAGGG-Cg -3'
miRNA:   3'- -CGUGCCGGa------------GCUUcCUGGC-CUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 119571 0.67 0.835229
Target:  5'- uCAUGGCCUCccagcaccuGGACCaGAcGGUCg -3'
miRNA:   3'- cGUGCCGGAGcuu------CCUGGcCUuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 117644 0.69 0.727134
Target:  5'- gGCGCGGCggggUCGcGGGccggccgggcGCCGGggGGUg -3'
miRNA:   3'- -CGUGCCGg---AGCuUCC----------UGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 116471 0.71 0.577591
Target:  5'- gGCGcCGGCCaccccggccccUCcgGAGGGGCCGG-GGGUCg -3'
miRNA:   3'- -CGU-GCCGG-----------AG--CUUCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 116439 0.68 0.755811
Target:  5'- -gACGGCCUgCGggGcGGCCGucgcgcuguGGGUCg -3'
miRNA:   3'- cgUGCCGGA-GCuuC-CUGGCcu-------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 115728 0.67 0.835229
Target:  5'- cGC-CGGCCgggcguauaUGAAuGGCCGGAggaGGGUCg -3'
miRNA:   3'- -CGuGCCGGa--------GCUUcCUGGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 115247 0.66 0.873484
Target:  5'- uGCACcaacgaGGCCUCGGuucGGGACUcGAGGccGUCg -3'
miRNA:   3'- -CGUG------CCGGAGCU---UCCUGGcCUUC--CAG- -5'
21573 5' -57.4 NC_004812.1 + 114691 0.67 0.801381
Target:  5'- -gGCGGCCgc--GGGACCGGAAugccGUCg -3'
miRNA:   3'- cgUGCCGGagcuUCCUGGCCUUc---CAG- -5'
21573 5' -57.4 NC_004812.1 + 112606 0.71 0.597566
Target:  5'- cGCcccCGGCUcCGAGGaGGCCGGccGGUCg -3'
miRNA:   3'- -CGu--GCCGGaGCUUC-CUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 111988 0.7 0.677871
Target:  5'- cCGCGGCCccccaagcgCGggGGGCUGGcGGGg- -3'
miRNA:   3'- cGUGCCGGa--------GCuuCCUGGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 110988 0.69 0.700709
Target:  5'- aGCGCGGCCguccccgcgcccaUGAGGGcGCUGGAgcgggagcacuacuGGGUCg -3'
miRNA:   3'- -CGUGCCGGa------------GCUUCC-UGGCCU--------------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 107957 0.66 0.880531
Target:  5'- cGCGCGGCgaggCGcGGGAUCGGAuagagAGG-Cg -3'
miRNA:   3'- -CGUGCCGga--GCuUCCUGGCCU-----UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 107859 0.76 0.345104
Target:  5'- aGCA-GGCCcgCGAAGGAgCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGa-GCUUCCU-GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 107302 0.73 0.509167
Target:  5'- gGCGgGGCCUUGggGcGuuCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGAGCuuC-Cu-GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 106776 0.68 0.79253
Target:  5'- -gGCGGCgUCGGgcGGGGCgcgCGGGAGGg- -3'
miRNA:   3'- cgUGCCGgAGCU--UCCUG---GCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 106736 0.7 0.687831
Target:  5'- gGCGgGGCCcaUCGuccGGGcGCgGGggGGUCg -3'
miRNA:   3'- -CGUgCCGG--AGCu--UCC-UGgCCuuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.