miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 107302 0.73 0.509167
Target:  5'- gGCGgGGCCUUGggGcGuuCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGAGCuuC-Cu-GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 15731 0.75 0.4095
Target:  5'- -gACGGCgaUCGAGGGGCCGcGggGGcCg -3'
miRNA:   3'- cgUGCCGg-AGCUUCCUGGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 121817 0.74 0.4172
Target:  5'- -gGCGGCCUCGGAGGcggagGCCGGGcgcuugcGGGcCg -3'
miRNA:   3'- cgUGCCGGAGCUUCC-----UGGCCU-------UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 5674 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 7940 0.74 0.435504
Target:  5'- gGCGCGGCCg-GggGGcgcguCCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCu----GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 128830 0.74 0.453361
Target:  5'- cGCGCcaGGCCUCGggGaaGAgCGGguGGUCg -3'
miRNA:   3'- -CGUG--CCGGAGCuuC--CUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 154868 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 39484 0.73 0.48087
Target:  5'- -gGCGGCgUUGAGGGugCGGc-GGUCg -3'
miRNA:   3'- cgUGCCGgAGCUUCCugGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 30858 0.73 0.499653
Target:  5'- cGCcCGGCCaUGggGGGCCGaGggGG-Cg -3'
miRNA:   3'- -CGuGCCGGaGCuuCCUGGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 124236 0.75 0.376374
Target:  5'- cCGCGGCggCGggGGGCCGGGucgagggcGGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCUu-------CCAG- -5'
21573 5' -57.4 NC_004812.1 + 155439 0.75 0.376374
Target:  5'- gGCgACGGCgaCGAGGGAgCGGggGGcCg -3'
miRNA:   3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 47781 0.76 0.345104
Target:  5'- uCGCGGCC-CGAGuGACCGGAGGG-Cg -3'
miRNA:   3'- cGUGCCGGaGCUUcCUGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 16856 0.81 0.183145
Target:  5'- cGCGCGGUCgCGggGGACCGcGAccuGGUCg -3'
miRNA:   3'- -CGUGCCGGaGCuuCCUGGC-CUu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 55261 0.79 0.222569
Target:  5'- aGCGCGGUgUUGggGGGCUGGGccaggcuguGGGUCg -3'
miRNA:   3'- -CGUGCCGgAGCuuCCUGGCCU---------UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 72327 0.79 0.247195
Target:  5'- gGCGCGGCCgggCGGgccgcgggggggaggGGGGgCGGggGGUCu -3'
miRNA:   3'- -CGUGCCGGa--GCU---------------UCCUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 68216 0.78 0.256695
Target:  5'- cGCGCGGCCggcCGggGGugCGcGggGGcCg -3'
miRNA:   3'- -CGUGCCGGa--GCuuCCugGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 135905 0.77 0.308705
Target:  5'- gGCGCGGCUcgcaGAGGGACCGGAAGc-- -3'
miRNA:   3'- -CGUGCCGGag--CUUCCUGGCCUUCcag -5'
21573 5' -57.4 NC_004812.1 + 33934 0.76 0.330184
Target:  5'- uGCACcggcuccuGGCCUCGGggGGGGCCGGGGucgcGGUCc -3'
miRNA:   3'- -CGUG--------CCGGAGCU--UCCUGGCCUU----CCAG- -5'
21573 5' -57.4 NC_004812.1 + 58270 0.76 0.330184
Target:  5'- cGCGCGGCCaUCac-GGGCCGGAggAGGUUg -3'
miRNA:   3'- -CGUGCCGG-AGcuuCCUGGCCU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 72038 0.76 0.345104
Target:  5'- -gACGGUCUgGggGGG-CGGggGGUCg -3'
miRNA:   3'- cgUGCCGGAgCuuCCUgGCCuuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.