miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 30858 0.73 0.499653
Target:  5'- cGCcCGGCCaUGggGGGCCGaGggGG-Cg -3'
miRNA:   3'- -CGuGCCGGaGCuuCCUGGC-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 107302 0.73 0.509167
Target:  5'- gGCGgGGCCUUGggGcGuuCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGAGCuuC-Cu-GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 5956 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 97401 0.71 0.597566
Target:  5'- cGCGCgGGCCUCGGGcGcGuACUGGuGGGUCg -3'
miRNA:   3'- -CGUG-CCGGAGCUU-C-C-UGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 112606 0.71 0.597566
Target:  5'- cGCcccCGGCUcCGAGGaGGCCGGccGGUCg -3'
miRNA:   3'- -CGu--GCCGGaGCUUC-CUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128929 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 4828 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 16922 0.71 0.607594
Target:  5'- cGCAUGGCCUgCG-AGGugCGGcAGGc- -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCugGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 26272 0.71 0.614625
Target:  5'- aCGCGGCCgCGcGGGugCcccgcggcgacaggGGAAGGUCg -3'
miRNA:   3'- cGUGCCGGaGCuUCCugG--------------CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44989 0.71 0.61764
Target:  5'- cCGCGGCCaCGAgccAGGuGCCGGAGGcGUUg -3'
miRNA:   3'- cGUGCCGGaGCU---UCC-UGGCCUUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 38901 0.71 0.587563
Target:  5'- cGCACGGCCUUGcccaucacGAGG-CCGuGAcgAGGUUg -3'
miRNA:   3'- -CGUGCCGGAGC--------UUCCuGGC-CU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 8352 0.71 0.577591
Target:  5'- gGCGCGGCCgccccaccgcgUCGgcGGccGCCGGGgcccgGGGUCc -3'
miRNA:   3'- -CGUGCCGG-----------AGCuuCC--UGGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128887 0.73 0.509167
Target:  5'- cGCAguaGGCCUCGAGGGcggcGgCGGAGGG-Cg -3'
miRNA:   3'- -CGUg--CCGGAGCUUCC----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 30942 0.72 0.518755
Target:  5'- cGCGCGGCC-CGAGGccucCCcGAGGGUCa -3'
miRNA:   3'- -CGUGCCGGaGCUUCcu--GGcCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5628 0.72 0.528414
Target:  5'- -gGCGG-CUCGggGG-CCGGGcccgGGGUCg -3'
miRNA:   3'- cgUGCCgGAGCuuCCuGGCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 48486 0.72 0.528414
Target:  5'- cGCGCGGCCg-GggGcucGACCGGcguGGUCu -3'
miRNA:   3'- -CGUGCCGGagCuuC---CUGGCCuu-CCAG- -5'
21573 5' -57.4 NC_004812.1 + 122286 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 130434 0.72 0.547925
Target:  5'- cGCuGCGGCCcgCGGAGGcggcGCUGGAGGG-Cg -3'
miRNA:   3'- -CG-UGCCGGa-GCUUCC----UGGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 5068 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 116471 0.71 0.577591
Target:  5'- gGCGcCGGCCaccccggccccUCcgGAGGGGCCGG-GGGUCg -3'
miRNA:   3'- -CGU-GCCGG-----------AG--CUUCCUGGCCuUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.