miRNA display CGI


Results 81 - 100 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 78802 0.71 0.627696
Target:  5'- gGC-CGGCUggggUCGggGGucgGCCGGcuGGGGUCg -3'
miRNA:   3'- -CGuGCCGG----AGCuuCC---UGGCC--UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 80598 0.7 0.637755
Target:  5'- cGCGgGGCC-CGGcugGGGGCUcgguGGggGGUCc -3'
miRNA:   3'- -CGUgCCGGaGCU---UCCUGG----CCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128735 0.7 0.637755
Target:  5'- cGCGCGGCggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga-GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 129317 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 122082 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 145206 0.7 0.64781
Target:  5'- aGCACGGCgUCGcGGuACCGGAAcgcGGUg -3'
miRNA:   3'- -CGUGCCGgAGCuUCcUGGCCUU---CCAg -5'
21573 5' -57.4 NC_004812.1 + 5275 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 44989 0.71 0.61764
Target:  5'- cCGCGGCCaCGAgccAGGuGCCGGAGGcGUUg -3'
miRNA:   3'- cGUGCCGGaGCU---UCC-UGGCCUUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 26272 0.71 0.614625
Target:  5'- aCGCGGCCgCGcGGGugCcccgcggcgacaggGGAAGGUCg -3'
miRNA:   3'- cGUGCCGGaGCuUCCugG--------------CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 16922 0.71 0.607594
Target:  5'- cGCAUGGCCUgCG-AGGugCGGcAGGc- -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCugGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 5068 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 116471 0.71 0.577591
Target:  5'- gGCGcCGGCCaccccggccccUCcgGAGGGGCCGG-GGGUCg -3'
miRNA:   3'- -CGU-GCCGG-----------AG--CUUCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 8352 0.71 0.577591
Target:  5'- gGCGCGGCCgccccaccgcgUCGgcGGccGCCGGGgcccgGGGUCc -3'
miRNA:   3'- -CGUGCCGG-----------AGCuuCC--UGGCCU-----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 38901 0.71 0.587563
Target:  5'- cGCACGGCCUUGcccaucacGAGG-CCGuGAcgAGGUUg -3'
miRNA:   3'- -CGUGCCGGAGC--------UUCCuGGC-CU--UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5956 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 97401 0.71 0.597566
Target:  5'- cGCGCgGGCCUCGGGcGcGuACUGGuGGGUCg -3'
miRNA:   3'- -CGUG-CCGGAGCUU-C-C-UGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 112606 0.71 0.597566
Target:  5'- cGCcccCGGCUcCGAGGaGGCCGGccGGUCg -3'
miRNA:   3'- -CGu--GCCGGaGCUUC-CUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128929 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 4828 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 46477 0.7 0.657853
Target:  5'- -gACGGCCUCagGGAGGGCCccgagcacgaGGuuGGUCc -3'
miRNA:   3'- cgUGCCGGAG--CUUCCUGG----------CCuuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.