miRNA display CGI


Results 101 - 120 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 36447 0.7 0.667876
Target:  5'- cCGCGGCCgCGuugucGAGGAgCGGggGGg- -3'
miRNA:   3'- cGUGCCGGaGC-----UUCCUgGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 71760 0.7 0.668877
Target:  5'- gGUugGGCCggucgcugcgacaggCGggGGGgCGG-GGGUCg -3'
miRNA:   3'- -CGugCCGGa--------------GCuuCCUgGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 24888 0.7 0.676874
Target:  5'- gGCGCaGGCUcacccccuccucgUCGAGGGugCGGugccuuccgaugAAGGUCa -3'
miRNA:   3'- -CGUG-CCGG-------------AGCUUCCugGCC------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 100294 0.7 0.677871
Target:  5'- aGCACGGacgcgccgcCCUCcAGGGGCuCGGggGGg- -3'
miRNA:   3'- -CGUGCC---------GGAGcUUCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 35535 0.7 0.677871
Target:  5'- aGCAUGGCgCgCGggGGGCgCGGgcGGg- -3'
miRNA:   3'- -CGUGCCG-GaGCuuCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 129317 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128735 0.7 0.637755
Target:  5'- cGCGCGGCggcCGAAGGcgcgGCCGGAgccGGGcUCg -3'
miRNA:   3'- -CGUGCCGga-GCUUCC----UGGCCU---UCC-AG- -5'
21573 5' -57.4 NC_004812.1 + 5956 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 97401 0.71 0.597566
Target:  5'- cGCGCgGGCCUCGGGcGcGuACUGGuGGGUCg -3'
miRNA:   3'- -CGUG-CCGGAGCUU-C-C-UGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 112606 0.71 0.597566
Target:  5'- cGCcccCGGCUcCGAGGaGGCCGGccGGUCg -3'
miRNA:   3'- -CGu--GCCGGaGCUUC-CUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 128929 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 4828 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 16922 0.71 0.607594
Target:  5'- cGCAUGGCCUgCG-AGGugCGGcAGGc- -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCugGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 26272 0.71 0.614625
Target:  5'- aCGCGGCCgCGcGGGugCcccgcggcgacaggGGAAGGUCg -3'
miRNA:   3'- cGUGCCGGaGCuUCCugG--------------CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 44989 0.71 0.61764
Target:  5'- cCGCGGCCaCGAgccAGGuGCCGGAGGcGUUg -3'
miRNA:   3'- cGUGCCGGaGCU---UCC-UGGCCUUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 94620 0.71 0.627696
Target:  5'- cGCAcCGGCCgggCGuuGGGACCGGcgacGAGGg- -3'
miRNA:   3'- -CGU-GCCGGa--GCu-UCCUGGCC----UUCCag -5'
21573 5' -57.4 NC_004812.1 + 26327 0.71 0.627696
Target:  5'- uCGCGGCCgcUCGggGGuCCcGggGGUg -3'
miRNA:   3'- cGUGCCGG--AGCuuCCuGGcCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 78724 0.71 0.627696
Target:  5'- gGC-CGGCUggggUCGggGGucgGCCGGcuGGGGUCg -3'
miRNA:   3'- -CGuGCCGG----AGCuuCC---UGGCC--UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 78802 0.71 0.627696
Target:  5'- gGC-CGGCUggggUCGggGGucgGCCGGcuGGGGUCg -3'
miRNA:   3'- -CGuGCCGG----AGCuuCC---UGGCC--UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 80598 0.7 0.637755
Target:  5'- cGCGgGGCC-CGGcugGGGGCUcgguGGggGGUCc -3'
miRNA:   3'- -CGUgCCGGaGCU---UCCUGG----CCuuCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.