miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 17214 0.78 0.279159
Target:  5'- uCGCGGCCggugccgcuggagCGggGGACaCGGAGGGUg -3'
miRNA:   3'- cGUGCCGGa------------GCuuCCUG-GCCUUCCAg -5'
21573 5' -57.4 NC_004812.1 + 29931 0.73 0.509167
Target:  5'- gGCgACGGCg-CGAGGGAgCGGggGGcCg -3'
miRNA:   3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 91137 0.72 0.52551
Target:  5'- gGCGgGGCCggUCGGggacgggcgguccgGGGGCCGGggGGa- -3'
miRNA:   3'- -CGUgCCGG--AGCU--------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 37818 0.66 0.887365
Target:  5'- gGCGCGcugcGCC-CGcGGGGCCGGGguGGGg- -3'
miRNA:   3'- -CGUGC----CGGaGCuUCCUGGCCU--UCCag -5'
21573 5' -57.4 NC_004812.1 + 72080 0.75 0.39271
Target:  5'- aGCGCGGCCUgGAcgcccGGGAU-GGGAGGUUu -3'
miRNA:   3'- -CGUGCCGGAgCU-----UCCUGgCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 105709 0.75 0.4095
Target:  5'- gGCGgGGCCggggcccCGAacaccGGGGCCGGggGGUg -3'
miRNA:   3'- -CGUgCCGGa------GCU-----UCCUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 124333 0.74 0.426729
Target:  5'- uCACGGCCcCGggGGgggacgccgcggACCGGGAGGa- -3'
miRNA:   3'- cGUGCCGGaGCuuCC------------UGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 36575 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 87054 0.74 0.444382
Target:  5'- gGCGCGGCCggcgccgCGGgcaGGGGCgCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGa------GCU---UCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 87886 0.73 0.48087
Target:  5'- cCGCGGuCCUCG--GGGCCGGggGGc- -3'
miRNA:   3'- cGUGCC-GGAGCuuCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 3322 0.74 0.453361
Target:  5'- cGCGCcaGGCCUCGggGaaGAgCGGguGGUCg -3'
miRNA:   3'- -CGUG--CCGGAGCuuC--CUgGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 63162 0.74 0.435504
Target:  5'- cCGCGGCCUCcucGGGGACCGaggcgauguucuGggGGUCc -3'
miRNA:   3'- cGUGCCGGAGc--UUCCUGGC------------CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 66626 0.77 0.308705
Target:  5'- uGCACGGCCUCGucGcGGCUGauGAGGUCg -3'
miRNA:   3'- -CGUGCCGGAGCuuC-CUGGCc-UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 29360 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 107859 0.76 0.345104
Target:  5'- aGCA-GGCCcgCGAAGGAgCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGa-GCUUCCU-GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 38841 0.74 0.435504
Target:  5'- gGCGCGGCCg-GggGGcgcguCCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGagCuuCCu----GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 135359 0.73 0.48087
Target:  5'- cGCGCGcGCUUCu-GGGGCCacgGGGAGGUCc -3'
miRNA:   3'- -CGUGC-CGGAGcuUCCUGG---CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 3379 0.73 0.509167
Target:  5'- cGCAguaGGCCUCGAGGGcggcGgCGGAGGG-Cg -3'
miRNA:   3'- -CGUg--CCGGAGCUUCC----UgGCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 155137 0.75 0.376374
Target:  5'- cCGCGGCggCGggGGGCCGGGucgagggcGGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCUu-------CCAG- -5'
21573 5' -57.4 NC_004812.1 + 152718 0.74 0.4172
Target:  5'- -gGCGGCCUCGGAGGcggagGCCGGGcgcuugcGGGcCg -3'
miRNA:   3'- cgUGCCGGAGCUUCC-----UGGCCU-------UCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.