miRNA display CGI


Results 41 - 60 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 3421 0.71 0.601575
Target:  5'- gGCugGGCCcCGgcGGcacgcggcgccagccGCCGcGggGGUCg -3'
miRNA:   3'- -CGugCCGGaGCuuCC---------------UGGC-CuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 29931 0.73 0.509167
Target:  5'- gGCgACGGCg-CGAGGGAgCGGggGGcCg -3'
miRNA:   3'- -CG-UGCCGgaGCUUCCUgGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 107859 0.76 0.345104
Target:  5'- aGCA-GGCCcgCGAAGGAgCCGGggGGg- -3'
miRNA:   3'- -CGUgCCGGa-GCUUCCU-GGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 105852 0.71 0.597566
Target:  5'- --uCGGCCUCG-GGGACguCGGAcggcGGGUCg -3'
miRNA:   3'- cguGCCGGAGCuUCCUG--GCCU----UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 66626 0.77 0.308705
Target:  5'- uGCACGGCCUCGucGcGGCUGauGAGGUCg -3'
miRNA:   3'- -CGUGCCGGAGCuuC-CUGGCc-UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 77508 0.7 0.691802
Target:  5'- cGCGCGGCaCgccgcuaccccguuuUCGcGAGGAUCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCG-G---------------AGC-UUCCUGGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 72080 0.75 0.39271
Target:  5'- aGCGCGGCCUgGAcgcccGGGAU-GGGAGGUUu -3'
miRNA:   3'- -CGUGCCGGAgCU-----UCCUGgCCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91090 0.7 0.687831
Target:  5'- cGCuuGGCCUCGGAcucgccGGccuGCCGGccguGGGGUCg -3'
miRNA:   3'- -CGugCCGGAGCUU------CC---UGGCC----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 130846 0.7 0.687831
Target:  5'- -gACGGCCUCGAcgcucaagugGGGGCCccGggGGcCg -3'
miRNA:   3'- cgUGCCGGAGCU----------UCCUGGc-CuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 145987 0.7 0.65685
Target:  5'- uGCACGGCCgcaaaacCGggGGugCGGcucuaacgacgggGAGGa- -3'
miRNA:   3'- -CGUGCCGGa------GCuuCCugGCC-------------UUCCag -5'
21573 5' -57.4 NC_004812.1 + 3809 0.7 0.646805
Target:  5'- -gGCGGCCUCGGcgccgccGGcGACgCGG-AGGUCc -3'
miRNA:   3'- cgUGCCGGAGCU-------UC-CUG-GCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 91900 0.71 0.624678
Target:  5'- cCGCGGCCUCG-GGGAagUCGGccuccaggcgguccAGGGUCa -3'
miRNA:   3'- cGUGCCGGAGCuUCCU--GGCC--------------UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 35729 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 36857 0.71 0.587563
Target:  5'- gGCAgGGCC-CGggGaGGCCGcGggGGg- -3'
miRNA:   3'- -CGUgCCGGaGCuuC-CUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 35969 0.72 0.557766
Target:  5'- cGgGCGGgagaCUCGggGGGCCGG--GGUCc -3'
miRNA:   3'- -CgUGCCg---GAGCuuCCUGGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 98540 0.72 0.538139
Target:  5'- uGCGCGGCCUCGGcgccGGGcGCCGGGGc--- -3'
miRNA:   3'- -CGUGCCGGAGCU----UCC-UGGCCUUccag -5'
21573 5' -57.4 NC_004812.1 + 91137 0.72 0.52551
Target:  5'- gGCGgGGCCggUCGGggacgggcgguccgGGGGCCGGggGGa- -3'
miRNA:   3'- -CGUgCCGG--AGCU--------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 29360 0.74 0.456979
Target:  5'- gGCGCGGgCUCGGgccgcggaggcgcgcGGGGCCGGgcGGa- -3'
miRNA:   3'- -CGUGCCgGAGCU---------------UCCUGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 87054 0.74 0.444382
Target:  5'- gGCGCGGCCggcgccgCGGgcaGGGGCgCGGggGGg- -3'
miRNA:   3'- -CGUGCCGGa------GCU---UCCUG-GCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 124333 0.74 0.426729
Target:  5'- uCACGGCCcCGggGGgggacgccgcggACCGGGAGGa- -3'
miRNA:   3'- cGUGCCGGaGCuuCC------------UGGCCUUCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.