miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 35729 0.71 0.606591
Target:  5'- aCGCGGCCcCGAcccagcccccugcGGGGCCgGGGAGGg- -3'
miRNA:   3'- cGUGCCGGaGCU-------------UCCUGG-CCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 92106 0.7 0.634737
Target:  5'- aGCACGGCCUCcucgggcgugcucuGggGGAUgCGGGAGcGg- -3'
miRNA:   3'- -CGUGCCGGAG--------------CuuCCUG-GCCUUC-Cag -5'
21573 5' -57.4 NC_004812.1 + 105709 0.75 0.4095
Target:  5'- gGCGgGGCCggggcccCGAacaccGGGGCCGGggGGUg -3'
miRNA:   3'- -CGUgCCGGa------GCU-----UCCUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 36575 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 135838 0.74 0.453361
Target:  5'- cGCugggacuCGGCgUCGggGGGCuCGGAGGG-Ca -3'
miRNA:   3'- -CGu------GCCGgAGCuuCCUG-GCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 135359 0.73 0.48087
Target:  5'- cGCGCGcGCUUCu-GGGGCCacgGGGAGGUCc -3'
miRNA:   3'- -CGUGC-CGGAGcuUCCUGG---CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 11569 0.72 0.528414
Target:  5'- uCGCGGCgUCGcuGGGGcACCGGggGGg- -3'
miRNA:   3'- cGUGCCGgAGC--UUCC-UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 153187 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 98249 0.71 0.577591
Target:  5'- gGCGCGGCCcUGGAGG-CCGGGAcccgcgcgcuGGUg -3'
miRNA:   3'- -CGUGCCGGaGCUUCCuGGCCUU----------CCAg -5'
21573 5' -57.4 NC_004812.1 + 44003 0.71 0.587563
Target:  5'- gGC-CGGCCUCcucGGAgCCGGggGcGUCg -3'
miRNA:   3'- -CGuGCCGGAGcuuCCU-GGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 138393 0.68 0.755811
Target:  5'- -aGCGgcGCCUCGAcgcGGAguaCUGGggGGUCg -3'
miRNA:   3'- cgUGC--CGGAGCUu--CCU---GGCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 37685 0.68 0.746346
Target:  5'- cGCGCGggcgagccguGCCUCGggGGgcgcGCCGGGcgucuggggcuGGGUg -3'
miRNA:   3'- -CGUGC----------CGGAGCuuCC----UGGCCU-----------UCCAg -5'
21573 5' -57.4 NC_004812.1 + 135588 0.7 0.64781
Target:  5'- uGCGCGGCCUCaacGGcCCGGuGGGg- -3'
miRNA:   3'- -CGUGCCGGAGcuuCCuGGCCuUCCag -5'
21573 5' -57.4 NC_004812.1 + 17004 0.7 0.667876
Target:  5'- gGCGCGgagucagaGCCUCGA---GCCGGggGGUg -3'
miRNA:   3'- -CGUGC--------CGGAGCUuccUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 91090 0.7 0.687831
Target:  5'- cGCuuGGCCUCGGAcucgccGGccuGCCGGccguGGGGUCg -3'
miRNA:   3'- -CGugCCGGAGCUU------CC---UGGCC----UUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 77508 0.7 0.691802
Target:  5'- cGCGCGGCaCgccgcuaccccguuuUCGcGAGGAUCGGggGG-Cg -3'
miRNA:   3'- -CGUGCCG-G---------------AGC-UUCCUGGCCuuCCaG- -5'
21573 5' -57.4 NC_004812.1 + 25895 0.69 0.697745
Target:  5'- gGCuCGGCCUCGGagucGGGGUCGGAgucGGaGUCg -3'
miRNA:   3'- -CGuGCCGGAGCU----UCCUGGCCU---UC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 59506 0.69 0.707606
Target:  5'- gGCGCGGCCccCGgcGGACaggGGgcGGUa -3'
miRNA:   3'- -CGUGCCGGa-GCuuCCUGg--CCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 25506 0.69 0.727134
Target:  5'- aCGCGGCCUCGcAGGACCccgccGAcGGGcCg -3'
miRNA:   3'- cGUGCCGGAGCuUCCUGGc----CU-UCCaG- -5'
21573 5' -57.4 NC_004812.1 + 148545 0.69 0.727134
Target:  5'- gGCGCGGCggggUCGcGGGccggccgggcGCCGGggGGUg -3'
miRNA:   3'- -CGUGCCGg---AGCuUCC----------UGGCCuuCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.