Results 81 - 100 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21573 | 5' | -57.4 | NC_004812.1 | + | 36176 | 0.7 | 0.657853 |
Target: 5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3' miRNA: 3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 145794 | 0.7 | 0.687831 |
Target: 5'- aGCGCGagcGCCUCGGGcucGGugUGGGcggcgGGGUCg -3' miRNA: 3'- -CGUGC---CGGAGCUU---CCugGCCU-----UCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 106736 | 0.7 | 0.687831 |
Target: 5'- gGCGgGGCCcaUCGuccGGGcGCgGGggGGUCg -3' miRNA: 3'- -CGUgCCGG--AGCu--UCC-UGgCCuuCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 22314 | 0.69 | 0.697745 |
Target: 5'- -gGgGGCCUCGGcgccGGGGCUGGAccuGGUUc -3' miRNA: 3'- cgUgCCGGAGCU----UCCUGGCCUu--CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 110988 | 0.69 | 0.700709 |
Target: 5'- aGCGCGGCCguccccgcgcccaUGAGGGcGCUGGAgcgggagcacuacuGGGUCg -3' miRNA: 3'- -CGUGCCGGa------------GCUUCC-UGGCCU--------------UCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 25506 | 0.69 | 0.727134 |
Target: 5'- aCGCGGCCUCGcAGGACCccgccGAcGGGcCg -3' miRNA: 3'- cGUGCCGGAGCuUCCUGGc----CU-UCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 148545 | 0.69 | 0.727134 |
Target: 5'- gGCGCGGCggggUCGcGGGccggccgggcGCCGGggGGUg -3' miRNA: 3'- -CGUGCCGg---AGCuUCC----------UGGCCuuCCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 44003 | 0.71 | 0.587563 |
Target: 5'- gGC-CGGCCUCcucGGAgCCGGggGcGUCg -3' miRNA: 3'- -CGuGCCGGAGcuuCCU-GGCCuuC-CAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 98249 | 0.71 | 0.577591 |
Target: 5'- gGCGCGGCCcUGGAGG-CCGGGAcccgcgcgcuGGUg -3' miRNA: 3'- -CGUGCCGGaGCUUCCuGGCCUU----------CCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 153187 | 0.72 | 0.547925 |
Target: 5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3' miRNA: 3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 16752 | 0.68 | 0.783539 |
Target: 5'- -uGgGGCUcagUCGGggggcgcgGGGGCCGGAGGGUg -3' miRNA: 3'- cgUgCCGG---AGCU--------UCCUGGCCUUCCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 106776 | 0.68 | 0.79253 |
Target: 5'- -gGCGGCgUCGGgcGGGGCgcgCGGGAGGg- -3' miRNA: 3'- cgUGCCGgAGCU--UCCUG---GCCUUCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 38741 | 0.67 | 0.801381 |
Target: 5'- -gGCGGCuCUCucGGGGCgGGGGucGGUCg -3' miRNA: 3'- cgUGCCG-GAGcuUCCUGgCCUU--CCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 152540 | 0.67 | 0.801381 |
Target: 5'- gGCGCGGCCggCGGAGGA--GGAGcGGcCu -3' miRNA: 3'- -CGUGCCGGa-GCUUCCUggCCUU-CCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 131453 | 0.67 | 0.810085 |
Target: 5'- uGCuCGGCCUUGGaccGGGACCuGGuGGGc- -3' miRNA: 3'- -CGuGCCGGAGCU---UCCUGG-CCuUCCag -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 105709 | 0.75 | 0.4095 |
Target: 5'- gGCGgGGCCggggcccCGAacaccGGGGCCGGggGGUg -3' miRNA: 3'- -CGUgCCGGa------GCU-----UCCUGGCCuuCCAg -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 36575 | 0.74 | 0.435504 |
Target: 5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3' miRNA: 3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 135838 | 0.74 | 0.453361 |
Target: 5'- cGCugggacuCGGCgUCGggGGGCuCGGAGGG-Ca -3' miRNA: 3'- -CGu------GCCGgAGCuuCCUG-GCCUUCCaG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 135359 | 0.73 | 0.48087 |
Target: 5'- cGCGCGcGCUUCu-GGGGCCacgGGGAGGUCc -3' miRNA: 3'- -CGUGC-CGGAGcuUCCUGG---CCUUCCAG- -5' |
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21573 | 5' | -57.4 | NC_004812.1 | + | 11569 | 0.72 | 0.528414 |
Target: 5'- uCGCGGCgUCGcuGGGGcACCGGggGGg- -3' miRNA: 3'- cGUGCCGgAGC--UUCC-UGGCCuuCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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