miRNA display CGI


Results 101 - 120 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21573 5' -57.4 NC_004812.1 + 33152 0.67 0.801381
Target:  5'- -gGgGGUCUCGggGGuCUcGggGGUCu -3'
miRNA:   3'- cgUgCCGGAGCuuCCuGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 5389 0.67 0.810085
Target:  5'- uCGCGGCg-CG--GGGCCGGggGcGUCg -3'
miRNA:   3'- cGUGCCGgaGCuuCCUGGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 27010 0.67 0.818632
Target:  5'- aGgACGGCCcCGccGGGGCCGcGggGGa- -3'
miRNA:   3'- -CgUGCCGGaGCu-UCCUGGC-CuuCCag -5'
21573 5' -57.4 NC_004812.1 + 127519 0.67 0.822006
Target:  5'- cGCGgGGCCggCGuccucggcgaggcucGAGGcCCGGAAGGa- -3'
miRNA:   3'- -CGUgCCGGa-GC---------------UUCCuGGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 29790 0.67 0.827016
Target:  5'- gGCGCGGC-----GGGGCCcGggGGUCg -3'
miRNA:   3'- -CGUGCCGgagcuUCCUGGcCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 22314 0.69 0.697745
Target:  5'- -gGgGGCCUCGGcgccGGGGCUGGAccuGGUUc -3'
miRNA:   3'- cgUgCCGGAGCU----UCCUGGCCUu--CCAG- -5'
21573 5' -57.4 NC_004812.1 + 106736 0.7 0.687831
Target:  5'- gGCGgGGCCcaUCGuccGGGcGCgGGggGGUCg -3'
miRNA:   3'- -CGUgCCGG--AGCu--UCC-UGgCCuuCCAG- -5'
21573 5' -57.4 NC_004812.1 + 105709 0.75 0.4095
Target:  5'- gGCGgGGCCggggcccCGAacaccGGGGCCGGggGGUg -3'
miRNA:   3'- -CGUgCCGGa------GCU-----UCCUGGCCuuCCAg -5'
21573 5' -57.4 NC_004812.1 + 36575 0.74 0.435504
Target:  5'- cGCAgGGgCaCGggGGGCCGG-GGGUCu -3'
miRNA:   3'- -CGUgCCgGaGCuuCCUGGCCuUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 135838 0.74 0.453361
Target:  5'- cGCugggacuCGGCgUCGggGGGCuCGGAGGG-Ca -3'
miRNA:   3'- -CGu------GCCGgAGCuuCCUG-GCCUUCCaG- -5'
21573 5' -57.4 NC_004812.1 + 135359 0.73 0.48087
Target:  5'- cGCGCGcGCUUCu-GGGGCCacgGGGAGGUCc -3'
miRNA:   3'- -CGUGC-CGGAGcuUCCUGG---CCUUCCAG- -5'
21573 5' -57.4 NC_004812.1 + 11569 0.72 0.528414
Target:  5'- uCGCGGCgUCGcuGGGGcACCGGggGGg- -3'
miRNA:   3'- cGUGCCGgAGC--UUCC-UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 153187 0.72 0.547925
Target:  5'- gGCGCGGCggcgcCGGAGGgccGCCGGggGGa- -3'
miRNA:   3'- -CGUGCCGga---GCUUCC---UGGCCuuCCag -5'
21573 5' -57.4 NC_004812.1 + 98249 0.71 0.577591
Target:  5'- gGCGCGGCCcUGGAGG-CCGGGAcccgcgcgcuGGUg -3'
miRNA:   3'- -CGUGCCGGaGCUUCCuGGCCUU----------CCAg -5'
21573 5' -57.4 NC_004812.1 + 44003 0.71 0.587563
Target:  5'- gGC-CGGCCUCcucGGAgCCGGggGcGUCg -3'
miRNA:   3'- -CGuGCCGGAGcuuCCU-GGCCuuC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 130637 0.71 0.607594
Target:  5'- cGCgACGGcCCUCGAGGaGGCgGGGAuGGUa -3'
miRNA:   3'- -CG-UGCC-GGAGCUUC-CUGgCCUU-CCAg -5'
21573 5' -57.4 NC_004812.1 + 94342 0.71 0.627696
Target:  5'- gGCGCGGCCUgCGcGGGGCgGGcGGcGUUg -3'
miRNA:   3'- -CGUGCCGGA-GCuUCCUGgCCuUC-CAG- -5'
21573 5' -57.4 NC_004812.1 + 152983 0.7 0.64781
Target:  5'- gGCugGGCCUgagCGccGGGgCGGGccuGGGUCa -3'
miRNA:   3'- -CGugCCGGA---GCuuCCUgGCCU---UCCAG- -5'
21573 5' -57.4 NC_004812.1 + 36176 0.7 0.657853
Target:  5'- gGCACGGaggCGggGGGaggcCCGGGAGGa- -3'
miRNA:   3'- -CGUGCCggaGCuuCCU----GGCCUUCCag -5'
21573 5' -57.4 NC_004812.1 + 145794 0.7 0.687831
Target:  5'- aGCGCGagcGCCUCGGGcucGGugUGGGcggcgGGGUCg -3'
miRNA:   3'- -CGUGC---CGGAGCUU---CCugGCCU-----UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.